GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001289-TA|BGIBMGA001289-PA|undefined
         (169 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    27   1.5  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    26   2.6  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    25   4.5  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   5.9  
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    25   5.9  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.9  
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    25   5.9  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.8  

>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 28  ALAAFTIVHPYWMGLEGYQYEHGPAALFAALSPIM-WGLFMC 68
           ALA   I H + +G E    ++ PA  F  LSP+M W L  C
Sbjct: 118 ALACTLITHAH-LGFESCVIDYFPARRFKKLSPLMHWILRGC 158


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 52  AALFAALSPIMWGLFMCMMHWAVCNDYAGSGTAFLESRVFKFFNKIAYSVYLTQFPIFFF 111
           A ++A    + WG F+      + N  A +  AF      +  NK   + +LT + +  F
Sbjct: 43  AGIYALFLFLNWGGFL------LTNLLAFAMPAFFSINAIETTNKADDTQWLTYYLVTSF 96

Query: 112 TVGVQRHAEYYSPLLLFHIPEMFAIFAISIM 142
              +    EY+S L+L+++P  + + AI ++
Sbjct: 97  LNVI----EYWSQLILYYVPVYWLLKAIFLI 123


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 56  AALSPIMWGLFMCMMHWAVCNDYAGSGTAFLESRVFKFFNKIAYSVYLTQFPIFFFTVGV 115
           A +SP++    +  MHW          T F+ + +F F N ++  +YL Q  +    V +
Sbjct: 105 ALVSPLLMAPQVSPMHW----------TVFVSAVLFNFLNGMSIGLYLVQASVQHHPVSI 154

Query: 116 QR 117
            R
Sbjct: 155 IR 156


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 13  TLSNSQVRLFWASCFALAAFTIVHPYWMGLEGYQYEH 49
           +LSN  +  +WA+C    +F  V   W+ L G  Y++
Sbjct: 336 SLSNPLITPWWATCCIFTSF--VFWIWIVLPGLYYQN 370


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 78  YAGSGTAFL--ESRVFKFFNKIAYSVYL 103
           Y G+G  F+  +++VF+F NK + S++L
Sbjct: 14  YPGAGRLFVRGDNKVFRFVNKKSESLFL 41


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 108 IFFFTVGVQRHAEYYSPLLLFHIPEMFAIFAISIM 142
           +FF  VG+      YS L++  I E F+   +S++
Sbjct: 423 MFFGVVGISNGLVNYSSLIISEINENFSSVTVSLL 457


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 78  YAGSGTAFL--ESRVFKFFNKIAYSVYL 103
           Y G+G  F+  +++VF+F NK + S++L
Sbjct: 14  YPGAGRLFVRGDNKVFRFVNKKSESLFL 41


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 100 SVYLTQFPIFFFTVGVQRHAEYYSPLLLFHIPEMFAIFAISIMTTVAIEMPFNQVYRIYF 159
           ++ LT+  I        +  EY   +LL   P   +   +S   T  IE  + +  R++F
Sbjct: 429 NIILTETTIRPRICAAYQKLEYNILVLLNEKPSSGSQLILSASPTCTIENIYIENTRLHF 488

Query: 160 GKSQT 164
            KSQT
Sbjct: 489 SKSQT 493


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.332    0.140    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,357
Number of Sequences: 5004
Number of extensions: 29606
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 8
length of query: 169
length of database: 2,362,478
effective HSP length: 68
effective length of query: 101
effective length of database: 2,022,206
effective search space: 204242806
effective search space used: 204242806
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 51 (24.6 bits)