Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001289-TA|BGIBMGA001289-PA|undefined
(169 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 31 0.37
11_01_0674 - 5502275-5502954,5503054-5504746 29 1.5
02_05_1165 + 34630369-34630431,34630771-34630855,34631212-346313... 29 1.5
01_01_1066 - 8400548-8400892,8401052-8401140,8401232-8401325 28 3.4
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 28 4.5
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 27 6.0
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 27 6.0
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 31.5 bits (68), Expect = 0.37
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 16 NSQVRLFWASCFALAAFTIVHPYWMGLEGYQYEHGP---AALFAALSPIMWGLFMCMMHW 72
NS V +F A+ L AF ++ + + +G AL+ AL IM+ F
Sbjct: 566 NSFVYIFKAANLTLTAFLVMTTFLRTKMRHDTTYGTIYMGALYFALDTIMFNGF------ 619
Query: 73 AVCNDYAGSGTAFLESRVFKFFNKIAYSV--YLTQFPIFFFTVGVQRHAEYY 122
A F + R FF Y++ ++ Q P+ FF VGV YY
Sbjct: 620 AELGMTVMKLPVFFKQRDLLFFPAWTYTIPSWILQIPVTFFEVGVYVFTTYY 671
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 14 LSNSQVRLFWASCFALAAFTIVHPYWMGLEGYQYEHGPAALFAALSPIMWGLFMC 68
L++S V + + L+ ++ V+ YW E Y + P ALFAA P + + C
Sbjct: 280 LASSFVSIDMSGQLKLSIWSQVNQYWQ--EVYAHPTDPCALFAACGPFSFCIATC 332
>02_05_1165 +
34630369-34630431,34630771-34630855,34631212-34631332,
34631588-34631831,34631922-34632026,34632110-34632154,
34632243-34632395,34632481-34632762,34632844-34632980,
34633065-34633152
Length = 440
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 23 WASCFALAAFTIVHPYWMGLEGYQYEHGPAALFAALSPIMWGLFMCMMHW 72
+ +C+ +A HPY G QY+H A + P W C+ +
Sbjct: 230 FTACYFMAGSFRTHPYETCTSGQQYKH--LAYVISFLPYFWRALQCLRRY 277
>01_01_1066 - 8400548-8400892,8401052-8401140,8401232-8401325
Length = 175
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 40 MGLEGYQYEHGPAALFAALSPIMWGLFMCMMHW 72
+G +GY Y GP L +P++ G + ++ W
Sbjct: 142 LGGDGYDYGGGPRGLVTTPAPLLLGAVVAVLLW 174
>08_01_0036 -
267236-268165,268255-268299,268485-268574,269485-269805,
269895-270098,271532-271664,271810-271881,273106-273168,
273252-275034,275169-275217
Length = 1229
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 20 RLFWASCFALAAFTIVHPYWMGLEGYQYEH-GPAALFAALSPIMWGLFM 67
RL WA F L A HP ++ L G ++ P L ++L P+ LF+
Sbjct: 188 RLLWAPVFELLADHRGHPAFLFLHGAAHDSLFPGLLSSSLHPLANTLFL 236
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 77 DYAGSGTAFLESRVFKFFN---KIAYSVYLTQFPIFFFTVGVQRHAEYYSP---LLLFHI 130
DY + L +F FF +++++ TQ + FTV +Q HA + P L+ H+
Sbjct: 426 DYFVTKCGVLLMSLFVFFTTTMSVSFTLRETQSRMLRFTVQLQHHARHQLPTFQLIFVHV 485
Query: 131 PEMFAIFAISI 141
E I I
Sbjct: 486 IESLVFVPIMI 496
>01_05_0662 -
24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 85 FLESRVFKFFNKIAYSV--YLTQFPIFFFTVGVQRHAEYY 122
F + R FF AY++ ++ Q PI F VGV YY
Sbjct: 584 FFKQRDLLFFPAWAYTIPSWILQIPITFLEVGVYVFITYY 623
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.332 0.140 0.457
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,501,927
Number of Sequences: 37544
Number of extensions: 169085
Number of successful extensions: 315
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 7
length of query: 169
length of database: 14,793,348
effective HSP length: 77
effective length of query: 92
effective length of database: 11,902,460
effective search space: 1095026320
effective search space used: 1095026320
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 57 (27.1 bits)
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