Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001289-TA|BGIBMGA001289-PA|undefined
(169 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45) 41 6e-04
SB_57881| Best HMM Match : FeoB_C (HMM E-Value=3.7) 34 0.070
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_10143| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_8381| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17) 27 6.1
SB_13075| Best HMM Match : 7tm_1 (HMM E-Value=4e-07) 27 6.1
SB_46230| Best HMM Match : Adeno_PX (HMM E-Value=3) 27 8.1
>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
Length = 936
Score = 40.7 bits (91), Expect = 6e-04
Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 4/147 (2%)
Query: 23 WASCFALAAFTIVHPY--WMGLEGYQYEHGPAALFAALSPIMWGLFMCMMHWAVCNDYAG 80
W F +A + PY + ++ + + S W L + + + Y G
Sbjct: 789 WCMAFIMAVAPLYGPYSEYRKIDPKPFNRTENVFYGTFSRFSWALALAWVIFCCHTGYGG 848
Query: 81 SGTAFLESRVFKFFNKIAYSVYLTQFPIFFFTVGVQRHAEYYSP--LLLFHIPEMFAIFA 138
L +R + +++ Y YL I F + +YS + + + + +
Sbjct: 849 LVNKILSARFWIPLSRLTYMAYLLHPIILFAYFASFKTLMFYSDVNVSFYFLAALCVAYL 908
Query: 139 ISIMTTVAIEMPFNQVYRIYFGKSQTK 165
+ + +V IEMP Q+ +I F + K
Sbjct: 909 CAFIVSVTIEMPMMQLEKILFKTDRKK 935
>SB_57881| Best HMM Match : FeoB_C (HMM E-Value=3.7)
Length = 162
Score = 33.9 bits (74), Expect = 0.070
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 12/149 (8%)
Query: 27 FALAAFTIVHPYWMGLEGYQYEHGPAALFAALSPIMWGLFMCM-----MHWAVCNDYAGS 81
+ LA V P + + + +H P+ F +M+G FM + W V + G
Sbjct: 15 WCLAIICAVAPLYGTYKTVKKDH-PSP-FNRAENVMYGTFMRFSWSLGLAWVVYACHIGK 72
Query: 82 G---TAFLESRVFKFFNKIAYSVYLTQFPIFFFTVGVQRHAEYYSPLLLF--HIPEMFAI 136
G L +R + +++ Y YL + R YYS + + + + A
Sbjct: 73 GGLVNKILSARFWIPLSRLTYMAYLVHIIVLLVIFTSTRTLFYYSDVNISWNFLSAVSAA 132
Query: 137 FAISIMTTVAIEMPFNQVYRIYFGKSQTK 165
+ + + +V IEMP Q+ +I F + K
Sbjct: 133 YLCAFIVSVTIEMPMMQLEKILFKTDRKK 161
>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 78 YAGSGTAFLESRVFKFFNKIAYSVYLTQFPIFFFTV-----GVQRHAEYYSPL-LLFHIP 131
Y GS T F+ S V F Y Y + F F V G + + PL +L HI
Sbjct: 109 YTGSATGFVPSSVLPF----TYQYYFIAWVAFIFVVCMTFLGAYLYVLHKRPLYMLLHIA 164
Query: 132 EMFAIFAISI 141
M +F +++
Sbjct: 165 RMKRVFCVTV 174
>SB_10143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 57 ALSPIMWGLFMCMMHWAVCNDYAGSGTAFLESRVFKFFNKIAYSVYLTQFP 107
A P +W LF+C + W C FL R + S LT+FP
Sbjct: 73 AYEPKVWALFVCFLGWLACRRVTSQAPQFL-GRCAR-LGAPTVSCALTRFP 121
>SB_8381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 61 IMWGLFMCMMHWAV-CNDYAGSGTAFLESRVFKFFNKIAYSVYLTQFPIFFFTVGVQRHA 119
+++GL + W + N A G A L RV F K A Y+T FP + + R
Sbjct: 26 VLFGLSVEPRAWKMDSNLSANHGKAKLRVRVAVFDQKAAVIAYITPFPPDLRSARLIRWL 85
Query: 120 EYYSPLLLFHI 130
+Y+ L L I
Sbjct: 86 KYFFRLRLIAI 96
>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
Length = 655
Score = 27.5 bits (58), Expect = 6.1
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 101 VYLTQFPIFFFTVGVQRHAEYYSPLLLFHIPEMFAIFAISIMTTVAIEMPFNQVYRIYFG 160
V LT+F I + +G+ AEYYS +LLF FA + +V + + Q+ ++ F
Sbjct: 438 VLLTKF-IAYTLMGLVLSAEYYSHVLLFIF--TFAFYVWHCFCSVTAK--YQQLLKLTFD 492
Query: 161 KSQTK 165
S+ K
Sbjct: 493 HSKEK 497
>SB_13075| Best HMM Match : 7tm_1 (HMM E-Value=4e-07)
Length = 311
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 115 VQRHAEYYSPLLLFHIPEMFAIFAISIMTTVAIEMPF 151
V R+AE + LL+ +F++ AISI T A+ +PF
Sbjct: 72 VMRYAEMW--LLIVLTASLFSLVAISIERTYAVFLPF 106
>SB_46230| Best HMM Match : Adeno_PX (HMM E-Value=3)
Length = 859
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 54 LFAALSPIMWGLFMCMMHWAVCNDYAGSGTAFLESRVFKFFNKIAYSVYLT 104
L A++P+ G + W + +G+ L R +K I Y YLT
Sbjct: 565 LSKAIAPLATGTLSRLASWGLNKALPKTGSGLLSVRQYKVDKLIKYKSYLT 615
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.332 0.140 0.457
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,104,247
Number of Sequences: 59808
Number of extensions: 181408
Number of successful extensions: 376
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 8
length of query: 169
length of database: 16,821,457
effective HSP length: 77
effective length of query: 92
effective length of database: 12,216,241
effective search space: 1123894172
effective search space used: 1123894172
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 57 (27.1 bits)
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