Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001288-TA|BGIBMGA001288-PA|undefined
         (303 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   4.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.4  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/36 (16%), Positives = 17/36 (47%)

Query: 236 VEEHSRVCEKNMWKSFLFIHNYFGFEEMTSQRLDRH 271
           +++  ++  K  W   ++++   GF  + +  L  H
Sbjct: 111 LKDKKKIRAKKRWSQCMYMYFLLGFRYLVNDELSAH 146


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/36 (16%), Positives = 17/36 (47%)

Query: 236 VEEHSRVCEKNMWKSFLFIHNYFGFEEMTSQRLDRH 271
           +++  ++  K  W   ++++   GF  + +  L  H
Sbjct: 425 LKDKKKIRAKKRWSQCMYMYFLLGFRYLVNDELSAH 460


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 83  DDKDGVTNFEKLLNAFSLKRNLRKVF 108
           DD+D    FE L N   + +N R++F
Sbjct: 33  DDRDLWLRFECLTNEMIVTKNGRRMF 58


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.138    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,736
Number of Sequences: 317
Number of extensions: 2728
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 303
length of database: 114,650
effective HSP length: 57
effective length of query: 246
effective length of database: 96,581
effective search space: 23758926
effective search space used: 23758926
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)