Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001288-TA|BGIBMGA001288-PA|undefined
         (303 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9781| Best HMM Match : MarC (HMM E-Value=8.8)                       36   0.031
SB_9785| Best HMM Match : Cytochrom_B_C (HMM E-Value=7.5)              36   0.041
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)                 30   2.7  
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_55869| Best HMM Match : NADH5_C (HMM E-Value=0.93)                  29   6.2  
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)            28   8.2  
SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)                   28   8.2  

>SB_9781| Best HMM Match : MarC (HMM E-Value=8.8)
          Length = 430

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 4   RVPRYSSLLWGICIPSSCSSFDLEEELSYRLSHLGITAK 42
           + P   ++ WG+CIP  C+  DLE  +   L  L IT+K
Sbjct: 157 KTPTVPTVRWGLCIPKQCTEEDLEIGIEAILQALNITSK 195


>SB_9785| Best HMM Match : Cytochrom_B_C (HMM E-Value=7.5)
          Length = 190

 Score = 35.9 bits (79), Expect = 0.041
 Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 11/107 (10%)

Query: 157 MPWAVIGRSAILYTDSFLYLSGFLNAYNLLQELERKGTIDLKSRL---INRWF--RLFPL 211
           M W ++G     +T  ++  +G +N Y    E+  + +    +     ++ +F   L P 
Sbjct: 40  MTWVILG-----HTYLWMLSTGVVNNYKTALEIVHRFSFQAINNAFLSVDSFFFLSLTPT 94

Query: 212 FVSLMLFCTYILPDISNGPQWNLVVEEHSRVCEKNMWKSFLFIHNYF 258
           ++ ++ F   + P + +GP W    +  +  CEK  W + L+I+N++
Sbjct: 95  YMFVIWFYVSLEPHLGSGPLW-YTHQMGNPACEKYWWTNVLYINNFY 140


>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 251 FLFIHNYFGFEEMTSQRL-DRHPSSGMRSYTRIFSRLHEVNSTRLNLQRAFW 301
           F+F H      E T+QRL   HP +G ++Y RI       N T   + +  W
Sbjct: 339 FVFYHGQPNRSESTTQRLPSHHPLNGKKAYERILRYFTTTNMTPDAVHQVGW 390


>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
          Length = 422

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 107 VFDLSDAATRVKGVDAFRGINALALLVAHKSMAMAH 142
           V DL   A R+ GVD+   ++ALAL + HK     H
Sbjct: 337 VKDLKSDARRIAGVDSSSRLDALALFLQHKHGDYTH 372


>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1322

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 107 VFDLSDAATRVKGVDAFRGINALALLVAHKSMAMAH 142
           V DL   A R+ GVD+   ++ALAL + HK     H
Sbjct: 938 VKDLKSDARRIAGVDSSSRLDALALFLHHKHGDYTH 973


>SB_55869| Best HMM Match : NADH5_C (HMM E-Value=0.93)
          Length = 280

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 95  LNAFSLKRNLRKVFDLSDAATRVKGVDAFRGINALALLVAHKSMAMAHNPYVNKVSFSEV 154
           LN+ +   NL K+ DLS  A    G+++    + L  ++   S+A++ N      +  ++
Sbjct: 77  LNSLTYTSNLLKMLDLSSLAV---GLNSLTYTSKLLKMLDLSSLAVSLNSLTYTSNLLKM 133

Query: 155 FGMPWAVIGRSAILYTDSFLYLSGFLN 181
             +    +G +++ YT   L +   L+
Sbjct: 134 LDLSSLAVGLNSLTYTSKLLKMLDLLS 160


>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
          Length = 936

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 6   PRYSSLLWGICIPSSCSSFDL 26
           P  + L WG+C+P  CS+ D+
Sbjct: 199 PFGAELKWGLCVPKGCSADDV 219


>SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)
          Length = 557

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 5   VPRYSSLLWGICIPSSCSSFDLEEELSYRLSHLGITAKVH 44
           V +Y  +L G   PS  S+   +  ++ R SHL I AKV+
Sbjct: 87  VDQYQLMLSGPVSPSQASARRQQHRMTGRQSHLNIEAKVY 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.138    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,412,369
Number of Sequences: 59808
Number of extensions: 352470
Number of successful extensions: 738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 731
Number of HSP's gapped (non-prelim): 11
length of query: 303
length of database: 16,821,457
effective HSP length: 82
effective length of query: 221
effective length of database: 11,917,201
effective search space: 2633701421
effective search space used: 2633701421
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)