Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001288-TA|BGIBMGA001288-PA|undefined
         (303 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22950.1 68414.m02868 oxidoreductase, 2OG-Fe(II) oxygenase fa...    34   0.14 
At1g21610.2 68414.m02703 wound-responsive family protein similar...    30   1.7  
At1g21610.1 68414.m02702 wound-responsive family protein similar...    30   1.7  
At5g29020.1 68418.m03592 hypothetical protein                          29   2.9  
At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (...    29   3.8  
At1g14730.1 68414.m01761 cytochrome B561 family similar to cytoc...    28   6.7  

>At1g22950.1 68414.m02868 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam domain PF03171 2OG-Fe(II)
           oxygenase superfamily
          Length = 388

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 182 AYNLLQELERKGTIDLKSRLINRWFRLFPLFVSLMLFCTYILPDISNGPQWNLVVEEHSR 241
           A + L    RK   + +S ++  +  +F   +    FC  +L ++ +  +W  V +  S 
Sbjct: 126 APSFLGAFSRKSEPNFRSSMVESYPGIFTFEMFKPQFCEMLLAEVEHMEKW--VYDSRST 183

Query: 242 VCEKNMWKSFLFIHNYFGFEEMTSQRLD 269
           +   N   +F  + + FGF+ M  + +D
Sbjct: 184 IMRPNTMNNFGVVLDDFGFDSMLQKLVD 211


>At1g21610.2 68414.m02703 wound-responsive family protein similar to
           wound-responsive protein 14.05 (GI:16506638) [Castanea
           sativa]; ESTs gb T42839 and gb|AA395192 come from this
           gene
          Length = 683

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 94  LLNAFSLKRNLRKVFDLSDAATRVKGVDAFRGIN 127
           L+   SLKRNL+ + D+ D+ATR K    F+ IN
Sbjct: 408 LIQLRSLKRNLKIMIDMGDSATREKDT-RFKQIN 440


>At1g21610.1 68414.m02702 wound-responsive family protein similar to
           wound-responsive protein 14.05 (GI:16506638) [Castanea
           sativa]; ESTs gb T42839 and gb|AA395192 come from this
           gene
          Length = 684

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 94  LLNAFSLKRNLRKVFDLSDAATRVKGVDAFRGIN 127
           L+   SLKRNL+ + D+ D+ATR K    F+ IN
Sbjct: 409 LIQLRSLKRNLKIMIDMGDSATREKDT-RFKQIN 441


>At5g29020.1 68418.m03592 hypothetical protein
          Length = 847

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 130 ALLVAHKSMAMAHNPYVNKVSFSEVFGMPWAVIGRSAILYTDSFLYLSGFLNAYNLLQEL 189
           A+ VA ++M M       K    E  G+  + + R A    D F+YLS       L++ L
Sbjct: 706 AIRVAERNMKMDSEVVRCKRLLVEAKGLKDSEVARDA---NDQFMYLSQAGANAQLIKAL 762

Query: 190 ERKGTIDLKSRLINRWFRLF 209
           E  G++  + + +  W R F
Sbjct: 763 EDGGSLATEKKQVEDWLRDF 782


>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase
           (CKI1) identical to GB:D87545
          Length = 1122

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 7   RYSSLLWGICIPSSCSSFDLEEEL 30
           R S+ LW  CIP +CSS   E E+
Sbjct: 278 RESNSLWSQCIPENCSSSGYEVEI 301


>At1g14730.1 68414.m01761 cytochrome B561 family similar to
           cytochrome GB:AAD11424 GI:4206110 [Mesembryanthemum
           crystallinum]; contains Pfam domain, PF03188: Cytochrome
           b561
          Length = 152

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 157 MPWAVIGRSAILYTDSFLYLSGFLNAYNLLQELERKGTIDLKSRLIN 203
           MPW V+G  A+LY      L+G +    +L +     + + +SRLIN
Sbjct: 88  MPWHVLGGRALLYMGIVAALTGLMQRATMLGQ-----STNAESRLIN 129


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.138    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,793,218
Number of Sequences: 28952
Number of extensions: 263917
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 7
length of query: 303
length of database: 12,070,560
effective HSP length: 81
effective length of query: 222
effective length of database: 9,725,448
effective search space: 2159049456
effective search space used: 2159049456
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)