GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001288-TA|BGIBMGA001288-PA|undefined
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    30   0.36 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    30   0.47 
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    28   1.4  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    27   2.5  
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    27   4.4  

>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 157 MPWAVIGRSAILYTDSFLYLSGFLNAYNLLQELERKGTIDLKSRLINRWFRLFPLFVSLM 216
           +P   +   A LY+   ++ + F  A N +  L+   T+D+++ ++N       LF+S M
Sbjct: 385 IPTKELSGGARLYS---IFNNVFTTALNSIDPLQNLSTVDIRTAILNSTGSRATLFLSEM 441

Query: 217 LFCTYILPDISNGPQWNLVVEEHSRVCEKNMWKSFLFIHNYFGFEEMT 264
            F      DI   PQ NL+       C + +++  + I +Y G  +++
Sbjct: 442 AF------DILVKPQLNLLAAP-CHQCVELVYEELMKICHYSGDSDIS 482


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 206 FRLFPLFVSLMLFCTYILPDISNGPQWNLVVEEHSRVCEKNMW 248
           F  F   +S+M   T ILP I N    N++  E+SR  ++ MW
Sbjct: 328 FATFAFRISVMYAVTRILPAIQN----NIIFLEYSRTSKQGMW 366


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 242 VCEKNMWKSFLFIH-NYFGFEEMTSQRLDR 270
           V EKN W+ +++I  NY  FEE+  + +DR
Sbjct: 352 VVEKNAWRRYVYIWLNYCLFEEIDVKDVDR 381


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 78  GTILDDDKDGVTNFEKLLNAFSLKRNLRKVFD-LSDAATRVKGVDAFRGI 126
           G I DD+K G   F+K LN  S+ +N+    + L     R+ G++A  GI
Sbjct: 3   GGIFDDNKAGFETFQKNLN--SVAKNVSDASNILLSMDKRLSGLEASAGI 50


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 101 KRNLRKVFDLSDAATRVKGVDAFRGI-NALALLVAHKSMAMAHNPY 145
           K+NL K+FD    ++ V+G    R I N ++ L++  +     NP+
Sbjct: 186 KQNLHKLFDRFSPSSSVQGTVPHRNIVNVMSGLISGATATAITNPF 231


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.138    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,354,813
Number of Sequences: 5004
Number of extensions: 54427
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 5
length of query: 303
length of database: 2,362,478
effective HSP length: 72
effective length of query: 231
effective length of database: 2,002,190
effective search space: 462505890
effective search space used: 462505890
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)