GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001288-TA|BGIBMGA001288-PA|undefined
         (303 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395...    31   0.87 
11_01_0211 - 1660249-1660352,1660504-1660547,1660893-1660934,166...    29   3.5  
12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160...    29   4.6  
01_07_0030 + 40601063-40601182,40601684-40602116,40602217-406023...    29   4.6  
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323...    29   6.1  
08_02_0715 - 20352613-20352852,20352926-20352982,20354208-203543...    28   8.1  

>11_06_0387 +
           23038490-23038662,23039246-23039303,23039471-23039551,
           23039640-23039675,23039821-23040060,23040155-23040293,
           23041417-23041889
          Length = 399

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 11  LLWGICIPSSCSSFDLEEELSYRLSHLGITAKVHNTMCTVKNVKR 55
           +L+ +C+P +   +D +   S    H+   A+ H T   +K ++R
Sbjct: 352 MLYDVCVPKNVEGWDFKPSASINGRHINSIARQHGTFNPIKCIRR 396


>11_01_0211 -
           1660249-1660352,1660504-1660547,1660893-1660934,
           1661010-1661098,1661181-1661225,1661501-1661545,
           1661574-1661681,1661765-1661850,1662253-1662340,
           1662884-1663084,1663491-1663566,1663652-1663701,
           1663783-1663845,1663924-1663977,1664093-1664195,
           1664328-1664430,1664516-1664576,1664872-1664912,
           1666605-1666761
          Length = 519

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 187 QELERKGTIDLKSRLINRWFRLFPLFVSLMLFCTYILPDIS 227
           ++ ++ G++D K  L++ W    PL  S++L+C +   D++
Sbjct: 264 EKADQNGSLDCKKSLLSNW----PLMSSIILYCVFSFHDMA 300


>12_01_0212 -
           1605544-1605647,1605799-1605842,1606189-1606230,
           1606306-1606394,1606477-1606521,1606801-1606845,
           1606874-1606981,1607065-1607150,1607553-1607640,
           1608185-1608385,1608790-1608865,1608951-1609000,
           1609082-1609144,1609225-1609278,1609395-1609497,
           1610010-1610050,1610654-1610685,1612086-1612224
          Length = 469

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 187 QELERKGTIDLKSRLINRWFRLFPLFVSLMLFCTYILPDIS 227
           ++ ++ G++D K  L+  W    PL  S++L+C +   D++
Sbjct: 214 EKADQNGSLDCKKSLLRNW----PLMSSIILYCVFSFHDMA 250


>01_07_0030 +
           40601063-40601182,40601684-40602116,40602217-40602326,
           40602506-40602550
          Length = 235

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 253 FIHNYFGFEEMTSQRLDRHPSSGMRSYTRIFSRLHEVNSTRLNLQRAF 300
           F HN+FG    T QRL+  PS+  +    + S     N T  +L   +
Sbjct: 33  FFHNFFGGYTATFQRLESRPSNPAQGAAPLASTNPSTNITDNSLSETY 80


>09_04_0683 -
           19431034-19431495,19431632-19431997,19432055-19432326,
           19433621-19433686,19433924-19433978,19434509-19434577,
           19435200-19435307,19435394-19435462,19435883-19436038,
           19436089-19436229,19436514-19436568,19437103-19437233,
           19437382-19437486
          Length = 684

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 127 NALALLVAHKSMAMAHNPYVNKVSFSEVFGMPWAVI 162
           N + +LV     A  H  Y +  SF ++ G PW+V+
Sbjct: 87  NPIWVLVTRMQEAPNHKDYWSMTSFVKLVGRPWSVV 122


>08_02_0715 -
           20352613-20352852,20352926-20352982,20354208-20354339,
           20354754-20354828,20355779-20355943,20356031-20356263,
           20356484-20356574,20356789-20357223,20357911-20357976,
           20358688-20358807,20358915-20359121
          Length = 606

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 151 FSEVFGMPWAVIGRSAILYTDSFLYLSGFL 180
           F+ + G P  +IG + IL+T+S L  S F+
Sbjct: 390 FARICGQPVGIIGNNGILFTESALKGSHFI 419


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.138    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,020,179
Number of Sequences: 37544
Number of extensions: 299792
Number of successful extensions: 687
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 6
length of query: 303
length of database: 14,793,348
effective HSP length: 82
effective length of query: 221
effective length of database: 11,714,740
effective search space: 2588957540
effective search space used: 2588957540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)