Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001287-TA|BGIBMGA001287-PA|undefined
         (104 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   1.8  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    25   2.4  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   2.4  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    25   2.4  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    25   3.2  

>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 27  ISDKRIITETILNSTILKFQHENDTVVESSRFNIVQLWERFP 68
           + D   + ++I+ + IL  +HE++T   +SR  I  L+  FP
Sbjct: 557 LQDDVDLLKSIIENQILDAKHESETFSSTSRKLIQNLFLLFP 598


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 8/38 (21%), Positives = 20/38 (52%)

Query: 18  LSRDCIELTISDKRIITETILNSTILKFQHENDTVVES 55
           ++ DCI+  I +KR      L + ++   ++N +  ++
Sbjct: 107 VANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYTDA 144


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 42  ILKFQHENDTVVESSRFNIVQLWERFPKVVVPRNGTSEQCRRDSQLYMDSLD 93
           I +FQ  +   VE+ RF      E++ K V+ R G     R    LY   L+
Sbjct: 645 ICEFQSRSGFCVETGRFINALNNEKWSKQVILRKGEVYGARSKFSLYAQDLE 696


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 45  FQHENDTVVESSRFNIVQLWERFPK--VVVPRNGTSEQCRRDSQLYMDSLDRLE 96
           +  +  TV++SS+F I   W R  +   +      +     D++L +D + +LE
Sbjct: 232 YTQKGRTVLKSSKFGIGGFWSRMKEKGKIARATWDTVSAAMDAKLSIDQMQKLE 285


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 8  LILTLFTSAVLSRDCIELTISDKRIITETILNSTILK 44
          L+ TLF S++L      LT+ D RI     + ST+LK
Sbjct: 40 LLSTLFCSSMLHLSK-GLTVKDVRIFFHDSIGSTLLK 75


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,204
Number of Sequences: 5004
Number of extensions: 15266
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 5
length of query: 104
length of database: 2,362,478
effective HSP length: 63
effective length of query: 41
effective length of database: 2,047,226
effective search space: 83936266
effective search space used: 83936266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)