GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001287-TA|BGIBMGA001287-PA|undefined
         (104 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0182 + 20997071-20997832,20998010-20998150                       33   0.042
08_02_1104 + 24339463-24340314,24340472-24340786                       28   1.6  
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849...    25   8.5  

>11_06_0182 + 20997071-20997832,20998010-20998150
          Length = 300

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 12  LFTSAVLSRDCIELTISDKRIITETILNSTILKFQHENDTVVESSRFNIVQLW--ERFPK 69
           L  +A L  +     ++D ++  + ++   +  F +EN  +VE+S  N++Q+W  +  PK
Sbjct: 163 LLYAATLLGEIHMFDLTDPKVAPKIVMGK-VKDFLYENIYIVEASCGNLLQIWRSDDLPK 221

Query: 70  VVVPRNGTSEQCRRDSQLYMDS 91
             VP     +    DS+   DS
Sbjct: 222 WDVPEGDEDDDHSFDSESEFDS 243


>08_02_1104 + 24339463-24340314,24340472-24340786
          Length = 388

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/44 (25%), Positives = 27/44 (61%)

Query: 55  SSRFNIVQLWERFPKVVVPRNGTSEQCRRDSQLYMDSLDRLELW 98
           SS+ ++V++W++ P V +   G ++     +  YM++ + LE++
Sbjct: 344 SSQCSMVKIWKKKPGVEIMNYGVADHTGISTFAYMETSEPLEIY 387


>02_02_0277 +
           8489717-8491468,8491571-8491610,8491719-8491841,
           8491959-8492014
          Length = 656

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/74 (22%), Positives = 31/74 (41%)

Query: 10  LTLFTSAVLSRDCIELTISDKRIITETILNSTILKFQHENDTVVESSRFNIVQLWERFPK 69
           +T+     LS +   L      ++ + I N  +   QH+++  VE    +   LWE    
Sbjct: 488 MTIDEKRKLSNNLQNLPPEKLDVVVQIIKNKNLSVRQHDDEIEVEIDSMDTETLWELDRF 547

Query: 70  VVVPRNGTSEQCRR 83
           V   +   S+Q R+
Sbjct: 548 VANYKKNLSKQKRK 561


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,880
Number of Sequences: 37544
Number of extensions: 80008
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 3
length of query: 104
length of database: 14,793,348
effective HSP length: 72
effective length of query: 32
effective length of database: 12,090,180
effective search space: 386885760
effective search space used: 386885760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)