GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001287-TA|BGIBMGA001287-PA|undefined
         (104 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   1.1  
U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AL132902-9|CAC14424.1|  455|Caenorhabditis elegans Hypothetical ...    26   4.4  
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U40029-10|AAN65326.1|  644|Caenorhabditis elegans Hypothetical p...    25   7.7  
U40029-9|AAN65325.1|  727|Caenorhabditis elegans Hypothetical pr...    25   7.7  

>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical
           protein F18C5.3 protein.
          Length = 1490

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 25  LTISDKRIITETILNSTILKF-QHENDTVVESS 56
           L I++KRI  ++ LN TI+ F +H+ D V E +
Sbjct: 378 LPIAEKRIFLDSYLNPTIIAFLKHDVDAVREEA 410


>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 22  CIELTISDKRIITETILNSTILKFQHENDTVVESSRFNIVQLW 64
           C +LT+ +  I+ +T+LN  +L+    +D + E+  +NI  +W
Sbjct: 479 CQKLTLLEVSILLDTLLNQ-VLELPEIDDYLSENKSYNI-SMW 519


>AL132902-9|CAC14424.1|  455|Caenorhabditis elegans Hypothetical
           protein Y71A12B.10 protein.
          Length = 455

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 9   ILTLFTSAVLSRDCIELTISDKRIITETILNSTILKFQHE 48
           + T+ TS +++R  I++ ++     T T+L +  + F H+
Sbjct: 228 LATMTTSTIIARPDIDVIMNSNEATTSTVLKARHVDFVHK 267


>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
           protein M79.1c protein.
          Length = 1209

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 33  ITETILNSTILKFQHENDTVVESSRFNIVQLWERFPKVVVPRNGTSEQCRRDSQLYMDSL 92
           + +++LNS     +H ++    + + ++V L E+  +  V R G +    +    Y+DS+
Sbjct: 658 LLKSVLNSNA---RHASEEFERNEQDDVVPLAEKNVRKAVTRLGGTMPKGQRIDAYLDSM 714

Query: 93  DRLELW 98
            R++ W
Sbjct: 715 RRVDSW 720


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 33  ITETILNSTILKFQHENDTVVESSRFNIVQLWERFPKVVVPRNGTSEQCRRDSQLYMDSL 92
           + +++LNS     +H ++    + + ++V L E+  +  V R G +    +    Y+DS+
Sbjct: 663 LLKSVLNSNA---RHASEEFERNEQDDVVPLAEKNVRKAVTRLGGTMPKGQRIDAYLDSM 719

Query: 93  DRLELW 98
            R++ W
Sbjct: 720 RRVDSW 725


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
           protein M79.1a protein.
          Length = 1224

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 33  ITETILNSTILKFQHENDTVVESSRFNIVQLWERFPKVVVPRNGTSEQCRRDSQLYMDSL 92
           + +++LNS     +H ++    + + ++V L E+  +  V R G +    +    Y+DS+
Sbjct: 673 LLKSVLNSNA---RHASEEFERNEQDDVVPLAEKNVRKAVTRLGGTMPKGQRIDAYLDSM 729

Query: 93  DRLELW 98
            R++ W
Sbjct: 730 RRVDSW 735


>U40029-10|AAN65326.1|  644|Caenorhabditis elegans Hypothetical
           protein F10G7.9b protein.
          Length = 644

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 14  TSAVLSRDCIELTISDKRIITETILNSTILKFQHENDTVVESSR 57
           T A  S    EL+  DKR   + +L    +KF+ E D V  +++
Sbjct: 264 TEAPPSEKSSELSRVDKRAQLDQLLAEISIKFEEERDKVQNANK 307


>U40029-9|AAN65325.1|  727|Caenorhabditis elegans Hypothetical
           protein F10G7.9a protein.
          Length = 727

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 14  TSAVLSRDCIELTISDKRIITETILNSTILKFQHENDTVVESSR 57
           T A  S    EL+  DKR   + +L    +KF+ E D V  +++
Sbjct: 347 TEAPPSEKSSELSRVDKRAQLDQLLAEISIKFEEERDKVQNANK 390


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,228
Number of Sequences: 27539
Number of extensions: 80892
Number of successful extensions: 213
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 12,573,161
effective HSP length: 71
effective length of query: 33
effective length of database: 10,617,892
effective search space: 350390436
effective search space used: 350390436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)