GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001287-TA|BGIBMGA001287-PA|undefined
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   1.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   1.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   1.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   1.3  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   1.8  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   1.8  

>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 14  TSAVLSRDCIELTISDKRIITETILNSTILKFQHENDTVVESSRFNIVQLWERFPKVVVP 73
           TS   SRD  E   S +  I  ++LN+TI    H N+   +   +NI  + E+ P V VP
Sbjct: 284 TSKERSRDRTERERSREPKIISSLLNNTI----HNNNNYKKLQYYNINYI-EQIP-VPVP 337


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 14  TSAVLSRDCIELTISDKRIITETILNSTILKFQHENDTVVESSRFNIVQLWERFPKVVVP 73
           TS   SRD  E   S +  I  ++LN+TI    H N+   +   +NI  + E+ P V VP
Sbjct: 295 TSKERSRDRTERERSREPKIISSLLNNTI----HNNNNYKKLQYYNINYI-EQIP-VPVP 348


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 14  TSAVLSRDCIELTISDKRIITETILNSTILKFQHENDTVVESSRFNIVQLWERFPKVVVP 73
           TS   SRD  E   S +  I  ++LN+TI    H N+   +   +NI  + E+ P V VP
Sbjct: 295 TSKERSRDRTERERSREPKIISSLLNNTI----HNNNNYKKLQYYNINYI-EQIP-VPVP 348


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 14  TSAVLSRDCIELTISDKRIITETILNSTILKFQHENDTVVESSRFNIVQLWERFPKVVVP 73
           TS   SRD  E   S +  I  ++LN+TI    H N+   +   +NI  + E+ P V VP
Sbjct: 284 TSKERSRDRTERERSREPKIISSLLNNTI----HNNNNYKKLQYYNINYI-EQIP-VPVP 337


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 80  QCRRDSQLYMDSLDRLELWALKN 102
           QC++ +++   +LD+L  W   N
Sbjct: 74  QCKKCTEIQKQNLDKLAEWFTTN 96


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 80  QCRRDSQLYMDSLDRLELWALKN 102
           QC++ +++   +LD+L  W   N
Sbjct: 74  QCKKCTEIQKQNLDKLAEWFTTN 96


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,545
Number of Sequences: 429
Number of extensions: 940
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)