Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001286-TA|BGIBMGA001286-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR013106|Immunoglobulin V-set,
IPR013151|Immunoglobulin
         (312 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    31   0.011
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.7  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   6.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 10/130 (7%)

Query: 143 EDGTLQIKFPQHRDSGIYECQI--STTPHMSHYIHLNVVEPTTEIIGGPELYIDRGSTIN 200
           EDGTL I   Q  + G Y C+        +S  I ++V  P    I        RG    
Sbjct: 756 EDGTLTINNIQKTNEGYYLCEAVNGIGSGLSAVIQISVQAPPQFDIKLRNQTSRRGDPAV 815

Query: 201 LTCVVLYSPEPPAYIFWNHNDAIISYDSPRGGVSVVTEK---GETTTSFLLIQQARPADS 257
           L C      E P  I WN N+  +    P+G       +        S L I++   +DS
Sbjct: 816 LQCEA--KGEKPIGILWNINNKRL---EPKGDNRYTIREEILANGVLSGLSIKRTERSDS 870

Query: 258 GTYQCNPSNA 267
             + C  +NA
Sbjct: 871 ALFTCVATNA 880



 Score = 27.9 bits (59), Expect = 0.10
 Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 144 DGTLQIKFPQHR-DSGIYECQISTTPHMSHYIHLNV---VEPTTEIIGGPELYIDRGSTI 199
           +GTL I+  +   D   Y+C    +   S    L V   V P        E  I+ G  +
Sbjct: 562 NGTLIIENVERASDQATYDCVAKNSQGYSARGSLEVQVMVPPQILPFDFGEDSINEGDGV 621

Query: 200 NLTCVVLYSPEPPAYIFWNHNDAIISYDSPRGGVSVVTEKGETTTSFLLIQQARPADSGT 259
           ++ C V    + P  I W  N   I  D   G   +V  +     S L I   +    G 
Sbjct: 622 SVQCTVSKG-DYPLNISWTLNGHFI--DQTNG---IVINRASKRVSTLSIDNVQSTHVGN 675

Query: 260 YQCNPSNAQS 269
           Y C  SN+ S
Sbjct: 676 YTCLASNSAS 685



 Score = 25.4 bits (53), Expect = 0.54
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 145 GTLQIKFPQHRDSGIYECQI-STTPHMSHYIHLNVVEPTTEIIGGPELYIDRGSTINLTC 203
           GTL I+  +  DSG Y C + ++    S    L V  P    I      ID G     TC
Sbjct: 290 GTLIIREAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLKAKIEPQVQTIDFGRPATFTC 349

Query: 204 VVLYSPEPPAYIFW-------NHNDAIISYDSPR 230
              +   P   I W       +HN+A++  +S R
Sbjct: 350 --NFEGNPIKTISWLKDGHPIDHNEAVLRIESVR 381



 Score = 24.6 bits (51), Expect = 0.94
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 247 LLIQQARPADSGTYQCNPSNAQSKSIVVHVLNGEYP 282
           L+I++A+  DSG Y C  +N+     V  VL    P
Sbjct: 292 LIIREAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 327



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 247 LLIQQARPADSGTYQCNPSNAQSKS 271
           L I+  R  D G YQC   N Q  +
Sbjct: 375 LRIESVRKEDKGMYQCFIRNDQESA 399



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 247 LLIQQA-RPADSGTYQCNPSNAQSKS 271
           L+I+   R +D  TY C   N+Q  S
Sbjct: 565 LIIENVERASDQATYDCVAKNSQGYS 590


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 61  AVADTPRPTPRTGPYFDLVASKNVTALLGKTAYLNWRVKNLGNK-TLNMQVSWVRHRDI 118
           +V+ T  PTP   P   L  SK+ ++    TA+ + ++  L  +   NM +S +R  +I
Sbjct: 92  SVSPTTPPTPSPPPEERLTPSKDASSKRIXTAFTSTQLLELEREFASNMYLSRLRRIEI 150


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 248 LIQQARPADSGTYQCNPSNAQSKSIVVHVLNGEYP 282
           L++Q + A +G   C+P   + KS+   VL G  P
Sbjct: 45  LLRQLKCA-TGEAPCDPVGRRLKSLAPLVLRGSCP 78


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,052
Number of Sequences: 317
Number of extensions: 3299
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 312
length of database: 114,650
effective HSP length: 57
effective length of query: 255
effective length of database: 96,581
effective search space: 24628155
effective search space used: 24628155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)