Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001286-TA|BGIBMGA001286-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR013106|Immunoglobulin V-set,
IPR013151|Immunoglobulin
(312 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 2.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 2.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 2.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 2.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.4
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 27 3.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.4
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 2.0
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 76 FDLVASKNVTALLGKT-AYLNWRVKNLGNKTLNMQVSWVRHRDIHLLTVGRYTYTSDQRF 134
+D + K TA GKT + KNLG ++L+ + + R++ V R Y+S++
Sbjct: 186 YDFLEDKR-TASYGKTHKRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFL 244
Query: 135 RAIHLPHSEDGTLQIKFPQHRDSGIYECQIST 166
H + LQ + P + S C I T
Sbjct: 245 N--HTRKRYEMVLQAELPDFKCS--IPCLIDT 272
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 2.0
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 76 FDLVASKNVTALLGKT-AYLNWRVKNLGNKTLNMQVSWVRHRDIHLLTVGRYTYTSDQRF 134
+D + K TA GKT + KNLG ++L+ + + R++ V R Y+S++
Sbjct: 186 YDFLEDKR-TASYGKTHKRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFL 244
Query: 135 RAIHLPHSEDGTLQIKFPQHRDSGIYECQIST 166
H + LQ + P + S C I T
Sbjct: 245 N--HTRKRYEMVLQAELPDFKCS--IPCLIDT 272
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 2.0
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 76 FDLVASKNVTALLGKT-AYLNWRVKNLGNKTLNMQVSWVRHRDIHLLTVGRYTYTSDQRF 134
+D + K TA GKT + KNLG ++L+ + + R++ V R Y+S++
Sbjct: 186 YDFLEDKR-TASYGKTHKRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFL 244
Query: 135 RAIHLPHSEDGTLQIKFPQHRDSGIYECQIST 166
H + LQ + P + S C I T
Sbjct: 245 N--HTRKRYEMVLQAELPDFKCS--IPCLIDT 272
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 2.0
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 76 FDLVASKNVTALLGKT-AYLNWRVKNLGNKTLNMQVSWVRHRDIHLLTVGRYTYTSDQRF 134
+D + K TA GKT + KNLG ++L+ + + R++ V R Y+S++
Sbjct: 186 YDFLEDKR-TASYGKTHKRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFL 244
Query: 135 RAIHLPHSEDGTLQIKFPQHRDSGIYECQIST 166
H + LQ + P + S C I T
Sbjct: 245 N--HTRKRYEMVLQAELPDFKCS--IPCLIDT 272
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 76 FDLVASKNVTALLGKT-AYLNWRVKNLGNKTLNMQVSWVRHRDIHLLTVGRYTYTSDQRF 134
+D + K TA GKT + KNLG ++L+ + + R++ V R Y+S++
Sbjct: 186 YDFLEDKR-TASYGKTHKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFL 244
Query: 135 RAIHLPHSEDGTLQIKFPQHRDSGIYECQIST 166
H + LQ + P + S C I T
Sbjct: 245 N--HTRKRYEMVLQAELPDFKCS--IPCLIDT 272
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 76 FDLVASKNVTALLGKT-AYLNWRVKNLGNKTLNMQVSWVRHRDIHLLTVGRYTYTSDQRF 134
+D + K TA GKT + KNLG ++L+ + + R++ V R Y+S++
Sbjct: 186 YDFLEDKR-TASYGKTHKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFL 244
Query: 135 RAIHLPHSEDGTLQIKFPQHRDSGIYECQIST 166
H + LQ + P + S C I T
Sbjct: 245 N--HTRKRYEMVLQAELPDFKCS--IPCLIDT 272
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 76 FDLVASKNVTALLGKT-AYLNWRVKNLGNKTLNMQVSWVRHRDIHLLTVGRYTYTSDQRF 134
+D + K TA GKT + KNLG ++L+ + + R++ V R Y+S++
Sbjct: 186 YDFLEDKR-TASYGKTHKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFL 244
Query: 135 RAIHLPHSEDGTLQIKFPQHRDSGIYECQIST 166
H + LQ + P + S C I T
Sbjct: 245 N--HTRKRYEMVLQAELPDFKCS--IPCLIDT 272
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 76 FDLVASKNVTALLGKT-AYLNWRVKNLGNKTLNMQVSWVRHRDIHLLTVGRYTYTSDQRF 134
+D + K TA GKT + KNLG ++L+ + + R++ V R Y+S++
Sbjct: 186 YDFLEDKR-TASYGKTHKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFL 244
Query: 135 RAIHLPHSEDGTLQIKFPQHRDSGIYECQIST 166
H + LQ + P + S C I T
Sbjct: 245 N--HTRKRYEMVLQAELPDFKCS--IPCLIDT 272
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 76 FDLVASKNVTALLGKT-AYLNWRVKNLGNKTLNMQVSWVRHRDIHLLTVGRYTYTSDQRF 134
+D + K TA GKT + KNLG ++L+ + + R++ V R Y+S++
Sbjct: 186 YDFLEDKR-TASYGKTHKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFL 244
Query: 135 RAIHLPHSEDGTLQIKFPQHRDSGIYECQIST 166
H + LQ + P + S C I T
Sbjct: 245 N--HTRKRYEMVLQAELPDFKCS--IPCLIDT 272
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 134 FRAIHLPHSEDGTLQIKFPQHRDSGIYECQ 163
F+ ++LP +ED + + + RD+ +CQ
Sbjct: 1006 FKLLYLPRTEDSYIDASYLRLRDTDFLDCQ 1035
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 76 FDLVASKNVTALLGKT-AYLNWRVKNLGNKTLNMQVSWVRHRDIHLLTVGRYTYTSDQRF 134
+D + K TA GKT + KNLG ++L+ + + R++ V R Y+S++
Sbjct: 186 YDFLEDKR-TASYGKTHKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFL 244
Query: 135 RAIHLPHSEDGTLQIKFPQHRDSGIYECQIST 166
H + LQ + P + S C I T
Sbjct: 245 N--HTRKRYEMVLQAELPDFKCS--IPCLIDT 272
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.133 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,977
Number of Sequences: 5004
Number of extensions: 54896
Number of successful extensions: 89
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 11
length of query: 312
length of database: 2,362,478
effective HSP length: 73
effective length of query: 239
effective length of database: 1,997,186
effective search space: 477327454
effective search space used: 477327454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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