GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001286-TA|BGIBMGA001286-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR013106|Immunoglobulin V-set,
IPR013151|Immunoglobulin
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0241 + 19815996-19816823                                         30   2.7  
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610...    29   4.8  
01_01_0644 - 4878742-4878758,4879134-4879231,4879913-4879935,488...    29   6.3  
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145...    28   8.4  

>01_05_0241 + 19815996-19816823
          Length = 275

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 11/92 (11%)

Query: 117 DIHLLTV--GRYTYTSDQRFR-AIH--LPHSEDGTLQIKFPQHRD--SGIYECQISTTPH 169
           D+H+  +  G  +YTS + ++ A H     S+  T ++K+ QH+   S     +I+TTP 
Sbjct: 18  DLHVSHIFRGSTSYTSKREYKKAEHEVCSTSQATTAKMKWSQHKIEFSEADHPKIATTPG 77

Query: 170 MSHYIHLNVVEPTTEIIGGPELYIDRGSTINL 201
                +  +VEPT   I    + ID GS+INL
Sbjct: 78  R----YPIMVEPTIRNIKVARVLIDGGSSINL 105


>10_02_0167 -
           6100676-6102111,6102174-6102708,6102967-6103975,
           6104006-6105036
          Length = 1336

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 178 VVEPTTEIIGGPELYIDRGSTINLTC 203
           VVEPT + I    + ID GS+INL C
Sbjct: 524 VVEPTIQNIKVARVLIDGGSSINLLC 549


>01_01_0644 -
           4878742-4878758,4879134-4879231,4879913-4879935,
           4880888-4880971,4882011-4882265,4883026-4883615,
           4884154-4884331,4884484-4884675,4884792-4884872
          Length = 505

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 215 IFWNHNDAIISYDSPRGGVSVVTEKGETTTSFLLIQQARPADSGTYQCNPSNAQSKSIVV 274
           IF+       S+ S RGG +  T    TT +    QQ R  DSG+  C+ +     S   
Sbjct: 254 IFYQTQPRQCSWSSDRGGGAAATASAVTTAAVQQDQQRR-RDSGSGSCSSTRDHEVSATS 312

Query: 275 HVLNGEYPAA 284
           +   G   AA
Sbjct: 313 YSTAGYAVAA 322


>11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,
            1456850-1457206,1457355-1457424,1457527-1457672,
            1457786-1457831,1457910-1457962,1458507-1458651,
            1459268-1459386,1459494-1459565,1459872-1459975,
            1460117-1460173,1460260-1460452,1460535-1460678,
            1460825-1460927,1461444-1461592,1462674-1462728,
            1464037-1464227,1464580-1464701,1464831-1464978,
            1465354-1465423,1465499-1465644,1466097-1466247,
            1466614-1466732,1466807-1466848,1466849-1466961,
            1467496-1467552,1467642-1467834,1468040-1468183,
            1468567-1468665
          Length = 1280

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 68   PTPRTGPYFDLVASKNVTALLGKTAYLNWRVKNLGNKTLNMQVS 111
            P   +  YFDL+A+  +T    +  +L  ++ N G   +N+ +S
Sbjct: 1171 PVTISSSYFDLLAASAITWQDNEDIFLRVKIVNFGPSAVNLTIS 1214


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,880,138
Number of Sequences: 37544
Number of extensions: 374292
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 4
length of query: 312
length of database: 14,793,348
effective HSP length: 82
effective length of query: 230
effective length of database: 11,714,740
effective search space: 2694390200
effective search space used: 2694390200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)