GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001286-TA|BGIBMGA001286-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR013106|Immunoglobulin V-set,
IPR013151|Immunoglobulin
         (312 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66820.1 68418.m08425 expressed protein                             32   0.57 
At2g07170.1 68415.m00821 expressed protein                             32   0.57 
At3g62990.1 68416.m07076 expressed protein predicted protein, Ar...    29   5.3  

>At5g66820.1 68418.m08425 expressed protein 
          Length = 519

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 288 GGQAFAPTSATHCLVLAACLFLS 310
           GG AF  + A HCL+L +CL LS
Sbjct: 23  GGGAFGSSKAFHCLLLLSCLLLS 45


>At2g07170.1 68415.m00821 expressed protein
          Length = 893

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 158 GIYECQISTTPHMSHYIHLNVVEPTTEIIGGPELYIDRGSTINLTCVVLYSPEPPAYI 215
           G+   ++S     +  + +++V+P  E IG    Y+  G+ + L  V+  SPE P  I
Sbjct: 131 GVLASKMSCYEDQNFGVFVSLVKPLFEAIGDQNKYVQSGAALCLARVIDSSPEAPVAI 188


>At3g62990.1 68416.m07076 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 134

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 156 DSGIYECQISTTPHMSHYIHLNVVEPTTEIIGGPELYIDRGSTIN 200
           D+    C++ST+  MS     + VE   ++ G  E ++D    +N
Sbjct: 46  DAESCRCEMSTSQRMSRSTDFDTVEEVADVAGENEGHVDEDGEVN 90


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,897,011
Number of Sequences: 28952
Number of extensions: 287235
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 3
length of query: 312
length of database: 12,070,560
effective HSP length: 81
effective length of query: 231
effective length of database: 9,725,448
effective search space: 2246578488
effective search space used: 2246578488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)