Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001285-TA|BGIBMGA001285-PA|undefined
         (79 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23870.3 68418.m02803 pectinacetylesterase family protein con...    25   4.8  
At5g23870.2 68418.m02802 pectinacetylesterase family protein con...    25   4.8  
At5g23870.1 68418.m02804 pectinacetylesterase family protein con...    25   4.8  
At1g60400.1 68414.m06800 F-box family protein contains F-box dom...    25   6.3  
At1g65610.1 68414.m07442 endo-1,4-beta-glucanase, putative / cel...    25   8.4  

>At5g23870.3 68418.m02803 pectinacetylesterase family protein
           contains Pfam profile: PF03283 pectinacetylesterase
          Length = 451

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 43  LDAIFDYCGSGKEETHIPYAPLRYRSKSTGESV 75
           +++ FD+C S  EET +     R  +K+  E+V
Sbjct: 342 INSCFDHCQSALEETWLSPTSPRINNKTIAETV 374


>At5g23870.2 68418.m02802 pectinacetylesterase family protein
           contains Pfam profile: PF03283 pectinacetylesterase
          Length = 436

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 43  LDAIFDYCGSGKEETHIPYAPLRYRSKSTGESV 75
           +++ FD+C S  EET +     R  +K+  E+V
Sbjct: 342 INSCFDHCQSALEETWLSPTSPRINNKTIAETV 374


>At5g23870.1 68418.m02804 pectinacetylesterase family protein
           contains Pfam profile: PF03283 pectinacetylesterase
          Length = 415

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 43  LDAIFDYCGSGKEETHIPYAPLRYRSKSTGESV 75
           +++ FD+C S  EET +     R  +K+  E+V
Sbjct: 342 INSCFDHCQSALEETWLSPTSPRINNKTIAETV 374


>At1g60400.1 68414.m06800 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 24  GLKVQGNQLLGTFKSSYSMLD 44
           G+K+ G+ +LGT  SS S+L+
Sbjct: 173 GVKLDGDSILGTLVSSCSVLE 193


>At1g65610.1 68414.m07442 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to endo-1,4-beta-glucanase
           GI:2065530 from [Lycopersicon esculentum]
          Length = 623

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 17  HMRPFGTGLKVQGNQLLGTFKSSYSMLDAIFDYCGSGKEETHIP 60
           HMR     LK   + LL TF +S + LD I+   G G  ++  P
Sbjct: 204 HMRDV---LKWGTDYLLLTFNNSATRLDHIYTQVGGGLRDSESP 244


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,196
Number of Sequences: 28952
Number of extensions: 67323
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 5
length of query: 79
length of database: 12,070,560
effective HSP length: 58
effective length of query: 21
effective length of database: 10,391,344
effective search space: 218218224
effective search space used: 218218224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)