GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001285-TA|BGIBMGA001285-PA|undefined
         (79 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    26   0.52 
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   0.69 
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    24   2.1  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    24   2.1  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    24   2.8  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    22   8.5  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    22   8.5  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 0.52
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 39  SYSMLDAIFDYCGSGKEETHIPY 61
           S S L  +    GSGKE T+IPY
Sbjct: 737 SLSCLGDVIHALGSGKEGTYIPY 759


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 2   PSPITAALARRIPIYHMRPFGTGLKVQGNQLLGTFKSSYSML-DAIFDYCGSGKEETHIP 60
           P  +T  L     I+ +R  G  L VQG   L  FK  +  L D I + C +  E+   P
Sbjct: 442 PDFVTTFLRNANSIFKIR--GASLSVQGVDEL-PFKMLFMQLFDRILEICAAMTEDVRPP 498

Query: 61  Y 61
           Y
Sbjct: 499 Y 499


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 12  RIPIYHMRPFGTGLKVQGNQLLGTFKSSYSMLDAIFDYCGSGKEETHIPYAPLRYRSKS 70
           RI IY++R     LK +G+    +   +Y   D  +  CGS   +  I   P ++  K+
Sbjct: 471 RIRIYNLRDKSLELKFKGHANAQSQNRAYFDDDGNYVICGSEDHQVFIWDLPPQHMHKT 529


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 35  TFKSSYSMLDAIFDYCGSGKEETHIPYAP 63
           + +S  S L  I+++C +GK    I +AP
Sbjct: 681 SLESGNSSLKPIYNFCETGKVTPQIYFAP 709


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 30  NQLLGTFKSSYSMLDAIFDYCGSGKEETHIPYAPLRYRSKS 70
           N L G +KS+ S +DA    CG G  +  + ++P   R +S
Sbjct: 81  NDLSG-YKSTLSSIDASVKACGLGYIDLFLLHSPYGDRIES 120


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 54  KEETHIPYAPLRYRSKSTGESVI 76
           +E+T I +APL+ ++   G++V+
Sbjct: 496 EEDTVIYWAPLKLKTMKDGKAVV 518


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 841

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 8  ALARRIPIYHMRPFGTGLKVQ 28
          A  + I  YH+RP+GT ++ Q
Sbjct: 41 AALKSIYDYHVRPYGTVVQSQ 61


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 354,235
Number of Sequences: 5004
Number of extensions: 12130
Number of successful extensions: 35
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 7
length of query: 79
length of database: 2,362,478
effective HSP length: 59
effective length of query: 20
effective length of database: 2,067,242
effective search space: 41344840
effective search space used: 41344840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)