GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001285-TA|BGIBMGA001285-PA|undefined
         (79 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0249 - 1844894-1845363,1845557-1848158                           27   2.5  
11_06_0298 - 22072391-22073863                                         25   5.8  
01_01_0882 - 6912053-6912319,6912434-6912484,6912979-6913125,691...    25   5.8  
08_02_1040 - 23873354-23874509,23875645-23875796                       25   7.7  
04_04_0725 - 27581658-27581663,27582379-27582481,27582697-275830...    25   7.7  
04_01_0078 - 879016-881288,884676-885141                               25   7.7  

>07_01_0249 - 1844894-1845363,1845557-1848158
          Length = 1023

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 1   MPSPITAALARRIPIYHMRPFGTGLKVQGNQLLGTFKSSYSMLDAI 46
           +  PI AAL+R      + PF T L +  N L GTF    S L A+
Sbjct: 105 LSGPIPAALSR------LAPFLTHLNLSNNGLNGTFPPQLSRLRAL 144


>11_06_0298 - 22072391-22073863
          Length = 490

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 13  IPIYHMRPFGTGLKVQGNQLLGTFKSSYSMLDAIFDYCGSGKEETHIPYAPLRY--RSKS 70
           +P  HMR    GL++ G + L   +S     +   +Y  +  ++    Y P  +  R+K 
Sbjct: 300 LPTEHMRELALGLELSGQRFLWVVRSPSDEGEVSANYYDAETKKNPFGYLPEGFVERTKE 359

Query: 71  TG 72
            G
Sbjct: 360 VG 361


>01_01_0882 -
           6912053-6912319,6912434-6912484,6912979-6913125,
           6913220-6913426,6913524-6914051
          Length = 399

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 1   MPSPITAAL--ARRIPIYHMR--PFGTGLKVQGNQLLGTFKSSYSMLDAIF 47
           +P+P+ AA   A  IP   +   PF +G  +  + LLGTF++S++ +   F
Sbjct: 266 VPAPVAAAATSALTIPTIGIGAGPFCSGQVLVYHDLLGTFQTSHAKVSPKF 316


>08_02_1040 - 23873354-23874509,23875645-23875796
          Length = 435

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 52  SGKEETHIPYAPLRYRSKSTGESVIGY 78
           SG    H+P AP R   ++TGE   G+
Sbjct: 212 SGSPNGHVPEAPQRTAWEATGERSHGF 238


>04_04_0725 -
           27581658-27581663,27582379-27582481,27582697-27583025,
           27583263-27583365,27583490-27583671,27584135-27584324,
           27584570-27584665,27584960-27585054,27585396-27585590
          Length = 432

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 16  YHMRPFGTG-LKVQGNQLLGTFKSSYSMLDAI 46
           + M P+  G ++V+ N+ +  +KSS+ + DA+
Sbjct: 73  WSMLPYNVGNVQVRNNEPINIWKSSFQITDAV 104


>04_01_0078 - 879016-881288,884676-885141
          Length = 912

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 30  NQLLGTFKSSYSMLDAIFDYCGSGKEETHIPYAPLRYRS 68
           N L    ++  ++ +  FD+CGS +    +P + L +RS
Sbjct: 850 NSLPNNLENLTALKELYFDFCGSIRSLPKLPKSLLYFRS 888


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,134
Number of Sequences: 37544
Number of extensions: 87418
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 14,793,348
effective HSP length: 58
effective length of query: 21
effective length of database: 12,615,796
effective search space: 264931716
effective search space used: 264931716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)