GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001285-TA|BGIBMGA001285-PA|undefined
         (79 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078787-2|AAC26950.1|  407|Caenorhabditis elegans Hypothetical ...    27   1.6  
AF000264-10|AAC71129.2|  272|Caenorhabditis elegans Hypothetical...    26   2.8  
AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical ...    26   3.6  
AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    25   4.8  
Z35639-4|CAA84696.1|  220|Caenorhabditis elegans Hypothetical pr...    25   6.4  

>AF078787-2|AAC26950.1|  407|Caenorhabditis elegans Hypothetical
           protein T17A3.3 protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 15  IYHMRPFGTGLKVQGNQLLGTF-KSSYSMLDAIFDY 49
           I+H +P G   K   N +L  F KS + ML   +DY
Sbjct: 108 IFHWKPSGIRFKEIANHVLEIFHKSEFYMLMITYDY 143


>AF000264-10|AAC71129.2|  272|Caenorhabditis elegans Hypothetical
           protein F43E2.7a protein.
          Length = 272

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 32  LLGTFKSSYSMLDAIFDYCGSGKEETHIPYAP 63
           L+ +F   YS++  +    GSG   + +PY+P
Sbjct: 193 LVNSFGYPYSVVSTVMAVAGSGLAVSFLPYSP 224


>AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical
           protein Y41G9A.2 protein.
          Length = 242

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)

Query: 37  KSSYSMLDAIFDY-CGSG 53
           KS YS++D++ DY CG G
Sbjct: 112 KSRYSVVDSVLDYVCGEG 129


>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 39  SYSMLDAIFDYCGSGKEETHIPYAPLRYR 67
           S+ +++++FDY   G E   + Y P++ R
Sbjct: 123 SHDLVESMFDYQAMGPENVVLIYDPIKTR 151


>Z35639-4|CAA84696.1|  220|Caenorhabditis elegans Hypothetical
           protein D2045.8 protein.
          Length = 220

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 37  KSSYSMLDAIFDYCGSGKEETHIPY 61
           ++SY +LD + + CG   E++  PY
Sbjct: 84  EASYFLLDPLIELCGERLEQSLNPY 108


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,501
Number of Sequences: 27539
Number of extensions: 63605
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 5
length of query: 79
length of database: 12,573,161
effective HSP length: 59
effective length of query: 20
effective length of database: 10,948,360
effective search space: 218967200
effective search space used: 218967200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)