GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001285-TA|BGIBMGA001285-PA|undefined
         (79 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   4.2  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    19   5.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   7.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 1.0
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 24  GLKVQGNQLLGTFKSSYSMLDAIFD-YCGSGKE--ETHIPYAPLR 65
           G  + G  +L TF +SY+ LD++ +    S ++  E H+ Y  LR
Sbjct: 254 GDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLR 298


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
          protein JHBP-1 protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 44 DAIFDYCGSGKEETHIPYAPLRYRSKSTGES 74
          DA+    G  K    +P  PL   S   GES
Sbjct: 50 DAVVSLAGGLKSFKILPIEPLAVDSVKIGES 80


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 37 KSSYSMLDAIFDYCGSGKE 55
          +SS S+      YCG GKE
Sbjct: 74 ESSRSIDPCASKYCGIGKE 92


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
          protein.
          Length = 129

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 56 ETHIPYAPLRYRSKSTGESVI 76
          E  + Y P R+R +  G  VI
Sbjct: 24 EDTMDYIPTRFRRQERGSIVI 44


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.0 bits (37), Expect = 7.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 11 RRIPIYHMRPFGTGLKVQGNQ 31
          +RIP+Y  R   T + V G Q
Sbjct: 78 KRIPLYVCRVLHTTVWVAGAQ 98


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,854
Number of Sequences: 429
Number of extensions: 661
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 79
length of database: 140,377
effective HSP length: 47
effective length of query: 32
effective length of database: 120,214
effective search space:  3846848
effective search space used:  3846848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)