Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001284-TA|BGIBMGA001284-PA|undefined
         (242 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.83 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.5  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 115 DGWELGIPDNNRQVPKDQWFDMHASD 140
           DG  L + DN+  + KD WF  HASD
Sbjct: 157 DGVTL-LADNSVSI-KDPWFPRHASD 180


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 171 EKKVKHITYQLTTDIWSTNPSYCSKLVIQA 200
           E   +HI +   TD  +T P Y S  VI A
Sbjct: 421 EDDARHIPHASVTDSENTVPRYLSPDVISA 450


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,365
Number of Sequences: 429
Number of extensions: 3552
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 242
length of database: 140,377
effective HSP length: 56
effective length of query: 186
effective length of database: 116,353
effective search space: 21641658
effective search space used: 21641658
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)