Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001284-TA|BGIBMGA001284-PA|undefined
         (242 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27440.1 68417.m03944 protochlorophyllide reductase B, chloro...    32   0.40 
At5g36740.1 68418.m04402 PHD finger family protein                     31   0.70 
At5g36670.1 68418.m04388 PHD finger family protein                     31   0.70 
At5g54190.1 68418.m06747 protochlorophyllide reductase A, chloro...    31   0.93 
At5g47910.1 68418.m05918 respiratory burst oxidase protein D (Rb...    29   2.2  
At2g02720.1 68415.m00214 pectate lyase family protein similar to...    29   2.2  
At2g29760.1 68415.m03616 pentatricopeptide (PPR) repeat-containi...    29   2.8  
At5g60010.1 68418.m07525 ferric reductase-like transmembrane com...    28   5.0  
At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SD...    28   5.0  
At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SD...    28   6.6  
At3g45810.1 68416.m04958 ferric reductase-like transmembrane com...    28   6.6  
At2g36590.1 68415.m04487 proline transporter, putative strong si...    27   8.7  
At2g11620.1 68415.m01249 hypothetical protein                          27   8.7  
At1g32440.1 68414.m04004 pyruvate kinase, putative similar to py...    27   8.7  

>At4g27440.1 68417.m03944 protochlorophyllide reductase B,
           chloroplast / PCR B / NADPH-protochlorophyllide
           oxidoreductase B (PORB) identical to SP:P21218
           protochlorophyllide reductase B, chloroplast precursor
           (EC 1.3.1.33) (PCR B) (NADPH-protochlorophyllide
           oxidoreductase B) (POR B) [Arabidopsis thaliana]
          Length = 401

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 10  SLESFGKDERDIFRDIYKEYRSLNGSEPINYHDWLVMNNFGILSDTQESLFQRKISKRST 69
           S  SF KD       I  + +S +GS  + +     + N  I + T  +     ++K  +
Sbjct: 24  SSSSF-KDSSLFGASITDQIKSEHGSSSLRFKREQSLRNLAIRAQTAATS-SPTVTK--S 79

Query: 70  VDNKREFINTVKKGDVLITGRGVG-GLIGHAAIMTSDYWVLEMPGGDGWELGIPDNNRQV 128
           VD K+    T++KG+V++TG   G GL    A+  +  W + M   D  +      +  +
Sbjct: 80  VDGKK----TLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAERAAKSVGM 135

Query: 129 PKDQWFDMH 137
           PKD +  MH
Sbjct: 136 PKDSYTVMH 144


>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 26  YKEYRSLNGSEPINYHDWLVMNNFGILSDTQESLFQRKI-SKRSTVDNKREFINTVKKGD 84
           Y+ Y+    S P +  +    + FG+L +    L +R I  KRS    +R  +      D
Sbjct: 437 YQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTND 496

Query: 85  VLITGRGVG 93
           +L++ +G G
Sbjct: 497 ILVSTKGTG 505


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 26  YKEYRSLNGSEPINYHDWLVMNNFGILSDTQESLFQRKI-SKRSTVDNKREFINTVKKGD 84
           Y+ Y+    S P +  +    + FG+L +    L +R I  KRS    +R  +      D
Sbjct: 437 YQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTND 496

Query: 85  VLITGRGVG 93
           +L++ +G G
Sbjct: 497 ILVSTKGTG 505


>At5g54190.1 68418.m06747 protochlorophyllide reductase A,
           chloroplast / PCR A / NADPH-protochlorophyllide
           oxidoreductase A (PORA) identical to SP:Q42536
           protochlorophyllide reductase A, chloroplast precursor
           (EC 1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A) [Arabidopsis thaliana]
          Length = 405

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 67  RSTVDNKREFINTVKKGDVLITGRGVG-GLIGHAAIMTSDYWVLEMPGGDGWELGIPDNN 125
           +S++D K+    T++KG+V++TG   G GL    A+  +  W + M   D  +      +
Sbjct: 81  KSSLDRKK----TLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAQS 136

Query: 126 RQVPKDQWFDMH 137
             +PKD +  MH
Sbjct: 137 AGMPKDSYTVMH 148


>At5g47910.1 68418.m05918 respiratory burst oxidase protein D
           (RbohD) / NADPH oxidase identical to respiratory burst
           oxidase protein D from Arabidopsis thaliana [gi:3242789]
          Length = 921

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 106 YWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDWTTVYRCTDAEAAVMA 156
           YWV    G   W  GI D   ++ ++   ++H +  T+VY   DA  A++A
Sbjct: 791 YWVTREQGSFEWFKGIMDEISELDEEGIIELH-NYCTSVYEEGDARVALIA 840


>At2g02720.1 68415.m00214 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 455

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 33  NGSEPINYHDWLVMNNFGILSDTQESLFQRKISKRSTVDNKR-EFINTVKK 82
           N ++  NYH  L M   GI+++T+  L Q    K++T    R E +N + K
Sbjct: 55  NVTDHFNYHAALAMETTGIVNETRRDLRQVGRGKKTTRRGGRFESLNAIDK 105


>At2g29760.1 68415.m03616 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 738

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 65  SKRSTVDNKREFINTVKKGDVLITGRGVGGLIGH 98
           SK   ++  RE  N+V+K DV +    +GGL  H
Sbjct: 411 SKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444


>At5g60010.1 68418.m07525 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 839

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 106 YWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDWTTVYRCTDAEAAVMA 156
           +WV        W  G+ D+  +  K    +MH +  T++Y   DA +A++A
Sbjct: 756 FWVTREQASFDWFKGVMDDIAEYDKTHVIEMH-NYLTSMYEAGDARSALIA 805


>At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 296

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 52  LSDTQESLFQRKISKRSTVDNKREFINT-VKKGDVLITGRGVGGLI 96
           +SD      Q  +S   +V +  EF+ T   K D+LI   GVGG+I
Sbjct: 56  ISDQSIVFHQLDVSDPVSVTSLAEFVKTHFGKLDILINNAGVGGVI 101


>At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SDR)
           family protein similar to carbonyl reductase GI:1049108
           from [Mus musculus]
          Length = 296

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 52  LSDTQESLFQRKISKRSTVDNKREFINT-VKKGDVLITGRGVGGLIGHA 99
           +SD      Q  ++  +++ +  EF+ T   K D+L+   G+GG+I  A
Sbjct: 56  ISDQSLLFHQLDVADPASITSLAEFVKTQFGKLDILVNNAGIGGIITDA 104


>At3g45810.1 68416.m04958 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 912

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 106 YWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDWTTVYRCTDAEAAVMA 156
           YWV        W  G+ D+     K    +MH +  T++Y   DA +A++A
Sbjct: 782 YWVTREQASFEWFKGVMDDIAVYDKTNVIEMH-NYLTSMYEAGDARSALIA 831


>At2g36590.1 68415.m04487 proline transporter, putative strong
           similarity to proline transporter 1 GI:1769901 from
           [Arabidopsis thaliana]; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 436

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 114 GDGWELGIPDNNRQVPKDQWF 134
           G+G ++ IPD   Q+  D WF
Sbjct: 11  GEGVDIEIPDTAHQISSDSWF 31


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 120 GIPDNNRQVPKDQWFDMHASDWTTVYR---CTDAEAAVMAARWADRTYYN 166
           G+  N  Q+P DQ    H+  W+T      CT     V  A   D+T+++
Sbjct: 46  GLTINKLQIPNDQQNQFHSYQWSTTTNHIPCTRGAPTVQPAA-NDQTFFS 94


>At1g32440.1 68414.m04004 pyruvate kinase, putative similar to
           pyruvate kinase isozyme G, chloroplast precursor
           [Nicotiana tabacum] SWISS-PROT:Q40546
          Length = 571

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 52  LSDTQESLF--QRKISKRSTVD-NKREFINTVKKGDVLITGRGVGGL 95
           L + QE  F  +R +S + TV  N  +F+N V+ GD+L+   G+  L
Sbjct: 181 LEEGQEFNFTIKRGVSLKDTVSVNYDDFVNDVEVGDILLVDGGMMSL 227


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,380,579
Number of Sequences: 28952
Number of extensions: 279282
Number of successful extensions: 673
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 14
length of query: 242
length of database: 12,070,560
effective HSP length: 79
effective length of query: 163
effective length of database: 9,783,352
effective search space: 1594686376
effective search space used: 1594686376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)