GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001284-TA|BGIBMGA001284-PA|undefined
         (242 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657     32   0.48 
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078...    31   0.84 
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047...    30   1.9  
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    29   2.6  
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054...    29   3.4  
10_08_0999 + 22121029-22121235,22121819-22122082,22122123-221223...    29   4.5  

>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
          Length = 1032

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 164 YYNPSGGEKKVKHITYQLTTDIWSTNPSYCSKLVIQAYYFGT 205
           YYN +GGE+ ++   Y   + + +  P Y   L   A+ F T
Sbjct: 189 YYNSAGGEQNIEEFYYNGASGVQNMVPPYMDTLTANAFSFTT 230


>01_06_1258 +
           35806557-35806932,35807517-35807679,35807789-35807837,
           35807943-35808866,35808954-35809049,35809142-35809257,
           35809345-35809447,35809570-35809658,35809750-35809900,
           35809995-35810141,35810238-35810366,35810451-35810529,
           35810616-35810725
          Length = 843

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 74  REFINTVKKGDVL--ITGRGVGGLIGHAAIMTSDYWVLEMPGGDGWELGIPDNNRQVPKD 131
           ++ +N +K  + +  I G  +G    +       YWV    G   W  G+ ++  +   +
Sbjct: 679 KDLLNNIKSNEEVESIHGSEIGSFKNNGPGRAYFYWVTREQGSFEWFKGVMNDVAESDHN 738

Query: 132 QWFDMHASDWTTVYRCTDAEAAVMA 156
              +MH +  T+VY   DA +A++A
Sbjct: 739 NIIEMH-NYLTSVYEEGDARSALIA 762


>08_01_1061 -
           10804269-10804352,10804464-10804593,10804696-10804745,
           10805154-10805216,10806235-10806375,10806541-10806925,
           10807735-10808339
          Length = 485

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 79  TVKKGDVLITGRGVGGLIGHAAIMTSDYWVLEMPG-GDGWELGIPDNNRQVPKDQWFDMH 137
           + K+GD +  G  V    G     T DYW LE+ G G  W        R V    +   H
Sbjct: 386 SAKQGDPITHGTVVSCFGGENESDTGDYWRLEIEGSGKSWRQNQKIRLRHVDTGGYLHSH 445

Query: 138 ASDWTTV 144
              +T +
Sbjct: 446 DRKYTRI 452


>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 106 YWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDWTTVYRCTDAEAAVMA 156
           YWV    G   W  G+ D   +  K    ++H +  T+VY   DA +A++A
Sbjct: 811 YWVTREQGSFEWFRGVMDEVAETDKKGVIELH-NYCTSVYEEGDARSALIA 860


>08_02_0880 +
           22203440-22204324,22204763-22204876,22204964-22205455,
           22205646-22205819,22206589-22206978,22209927-22210022,
           22210645-22210760,22210872-22211042,22211126-22211285,
           22211388-22211573,22211665-22211793,22211918-22211996,
           22212159-22212268
          Length = 1033

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 106 YWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDWTTVYRCTDAEAAVMA 156
           YWV   PG   W  G+ +   ++ K    ++H +  T+VY   DA + +++
Sbjct: 903 YWVTREPGSFEWFKGVMNEVAEMDKKGVIELH-NYLTSVYEERDARSTLLS 952


>10_08_0999 +
           22121029-22121235,22121819-22122082,22122123-22122324,
           22122456-22122590,22122668-22122778,22122871-22122959,
           22123237-22123299,22123461-22123636,22123785-22123887,
           22124286-22124461,22124625-22124733,22124851-22124943,
           22126294-22126435,22126655-22126671
          Length = 628

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 51  ILSDTQESLF--QRKISKRSTVD-NKREFINTVKKGDVLITGRGVGGL 95
           +L + QE  F  +R +S + TV  N  +FIN V+ GD+L+   G+  L
Sbjct: 183 MLEEGQEFNFTIKRGVSTKDTVSVNYDDFINDVEVGDILLVDGGMMSL 230


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,828,828
Number of Sequences: 37544
Number of extensions: 344740
Number of successful extensions: 686
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 7
length of query: 242
length of database: 14,793,348
effective HSP length: 80
effective length of query: 162
effective length of database: 11,789,828
effective search space: 1909952136
effective search space used: 1909952136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)