GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001284-TA|BGIBMGA001284-PA|undefined
         (242 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24215| Best HMM Match : PSK (HMM E-Value=6.2)                       31   1.1  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_39802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)           28   8.0  
SB_331| Best HMM Match : F5_F8_type_C (HMM E-Value=0.034)              28   8.0  

>SB_24215| Best HMM Match : PSK (HMM E-Value=6.2)
          Length = 254

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 138 ASDWTTVYRCTDAEAAVMAARWADRTYYNPSGGEKKVKHITYQLTTDIW 186
           A +W+ +  C D   A ++A W  +    P GG KK   I  ++T+ I+
Sbjct: 60  AKNWSKLGNCKDRVEAQLSAFW--KHLLRPEGGMKKTATIAAEVTSKIY 106


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 165  YNPSGGEKKVKHITYQLTTDIWSTNPSYCSKLVIQAYYFG 204
            YN   G+  V+H  Y   +D+W +  S+  +  I  YY G
Sbjct: 1894 YNDDNGDSDVRHDDYDGDSDLWRSGSSWILRAYI-CYYLG 1932


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 15  GKDERDIFRDIYKEYRSLNGSEPINYHDWLVMNNFGILSDTQESLFQRKISKRSTVDNK 73
           G+ +R  +    +E+ +L  +    +HD+L    F +++D+    +Q   +K S  D++
Sbjct: 712 GRQQRKRYCAYRREFLALKWAVTEKFHDYLYGRQFHVITDSNPLTYQLTSAKLSASDHR 770


>SB_39802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 4   INSEKYSLESFGKDERDIFRDIYKEYRSLNGSEPINYHD-WLVMNN 48
           I++++   +S GKD     +DI ++Y SL+G+ P +    WL+ +N
Sbjct: 115 IDNKRIVHKSAGKDPSFFNKDICEKYMSLHGTYPKSMRQFWLLWDN 160


>SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)
          Length = 1076

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 144 VYRCTDAEAAVMAARWADRTYYNPSGGEKKVKHI 177
           +Y+CTDA   V+  R AD        GE  + H+
Sbjct: 755 LYKCTDASPLVVGCRVADLDSTEKGSGEAALFHV 788


>SB_331| Best HMM Match : F5_F8_type_C (HMM E-Value=0.034)
          Length = 302

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 156 AARWADRTYYNPSGGEKKVKHITYQLTTDIWSTNPSYC 193
           A R + R  YNP G E+ ++H  Y     + +   ++C
Sbjct: 131 ATRTSRRARYNPRGTERTLRHTRYSTHIAVRTVQHAHC 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,808,754
Number of Sequences: 59808
Number of extensions: 377889
Number of successful extensions: 795
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 7
length of query: 242
length of database: 16,821,457
effective HSP length: 80
effective length of query: 162
effective length of database: 12,036,817
effective search space: 1949964354
effective search space used: 1949964354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)