Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001284-TA|BGIBMGA001284-PA|undefined
(242 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC088356-1|AAH88356.1| 518|Homo sapiens malate dehydrogenase 1B... 34 0.39
BC033509-1|AAH33509.1| 283|Homo sapiens MDH1B protein protein. 34 0.39
AC008269-1|AAX93274.1| 283|Homo sapiens unknown protein. 34 0.39
Y18880-1|CAB56154.1| 715|Homo sapiens midline 2 protein protein. 30 8.4
BT006663-1|AAP35309.1| 685|Homo sapiens midline 2 protein. 30 8.4
BC017707-1|AAH17707.1| 685|Homo sapiens midline 2 protein. 30 8.4
AY625004-1|AAT48105.1| 685|Homo sapiens TRIM1 beta protein. 30 8.4
AL034399-3|CAI42074.1| 685|Homo sapiens midline 2 protein. 30 8.4
AL034399-2|CAI42073.1| 715|Homo sapiens midline 2 protein. 30 8.4
AK096138-1|BAC04707.1| 460|Homo sapiens protein ( Homo sapiens ... 30 8.4
AF196481-1|AAF07341.1| 685|Homo sapiens RING finger protein pro... 30 8.4
>BC088356-1|AAH88356.1| 518|Homo sapiens malate dehydrogenase 1B,
NAD (soluble) protein.
Length = 518
Score = 34.3 bits (75), Expect = 0.39
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 73 KREFINTVKKGDVLITGRGVGGLIG-HAAIMTSDYWVLEMPGGDGWELGI-PDNNRQVPK 130
KREF+ +K ++ TGR GG++ H+ T YW P G+ LGI + +PK
Sbjct: 355 KREFVAILK--NLTTTGRQFGGILAAHSIATTLKYWYHGSPPGEIVSLGILSEGQFGIPK 412
Query: 131 DQWFDM 136
F M
Sbjct: 413 GIVFSM 418
>BC033509-1|AAH33509.1| 283|Homo sapiens MDH1B protein protein.
Length = 283
Score = 34.3 bits (75), Expect = 0.39
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 73 KREFINTVKKGDVLITGRGVGGLIG-HAAIMTSDYWVLEMPGGDGWELGI-PDNNRQVPK 130
KREF+ +K ++ TGR GG++ H+ T YW P G+ LGI + +PK
Sbjct: 142 KREFVAILK--NLTTTGRQFGGILAAHSIATTLKYWYHGSPPGEIVSLGILSEGQFGIPK 199
Query: 131 DQWFDM 136
F M
Sbjct: 200 GIVFSM 205
>AC008269-1|AAX93274.1| 283|Homo sapiens unknown protein.
Length = 283
Score = 34.3 bits (75), Expect = 0.39
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 73 KREFINTVKKGDVLITGRGVGGLIG-HAAIMTSDYWVLEMPGGDGWELGI-PDNNRQVPK 130
KREF+ +K ++ TGR GG++ H+ T YW P G+ LGI + +PK
Sbjct: 142 KREFVAILK--NLTTTGRQFGGILAAHSIATTLKYWYHGSPPGEIVSLGILSEGQFGIPK 199
Query: 131 DQWFDM 136
F M
Sbjct: 200 GIVFSM 205
>Y18880-1|CAB56154.1| 715|Homo sapiens midline 2 protein protein.
Length = 715
Score = 29.9 bits (64), Expect = 8.4
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 88 TGRGVGGLIGHAAIMTS-DYWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDW 141
+G G G G+ I + YW + M + +GI + PK++W +AS W
Sbjct: 553 SGTGCYGAAGNIFIDSGCHYWEVVMGSSTWYAIGIA--YKSAPKNEWIGKNASSW 605
>BT006663-1|AAP35309.1| 685|Homo sapiens midline 2 protein.
Length = 685
Score = 29.9 bits (64), Expect = 8.4
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 88 TGRGVGGLIGHAAIMTS-DYWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDW 141
+G G G G+ I + YW + M + +GI + PK++W +AS W
Sbjct: 523 SGTGCYGAAGNIFIDSGCHYWEVVMGSSTWYAIGIA--YKSAPKNEWIGKNASSW 575
>BC017707-1|AAH17707.1| 685|Homo sapiens midline 2 protein.
Length = 685
Score = 29.9 bits (64), Expect = 8.4
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 88 TGRGVGGLIGHAAIMTS-DYWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDW 141
+G G G G+ I + YW + M + +GI + PK++W +AS W
Sbjct: 523 SGTGCYGAAGNIFIDSGCHYWEVVMGSSTWYAIGIA--YKSAPKNEWIGKNASSW 575
>AY625004-1|AAT48105.1| 685|Homo sapiens TRIM1 beta protein.
Length = 685
Score = 29.9 bits (64), Expect = 8.4
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 88 TGRGVGGLIGHAAIMTS-DYWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDW 141
+G G G G+ I + YW + M + +GI + PK++W +AS W
Sbjct: 523 SGTGCYGAAGNIFIDSGCHYWEVVMGSSTWYAIGIA--YKSAPKNEWIGKNASSW 575
>AL034399-3|CAI42074.1| 685|Homo sapiens midline 2 protein.
Length = 685
Score = 29.9 bits (64), Expect = 8.4
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 88 TGRGVGGLIGHAAIMTS-DYWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDW 141
+G G G G+ I + YW + M + +GI + PK++W +AS W
Sbjct: 523 SGTGCYGAAGNIFIDSGCHYWEVVMGSSTWYAIGIA--YKSAPKNEWIGKNASSW 575
>AL034399-2|CAI42073.1| 715|Homo sapiens midline 2 protein.
Length = 715
Score = 29.9 bits (64), Expect = 8.4
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 88 TGRGVGGLIGHAAIMTS-DYWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDW 141
+G G G G+ I + YW + M + +GI + PK++W +AS W
Sbjct: 553 SGTGCYGAAGNIFIDSGCHYWEVVMGSSTWYAIGIA--YKSAPKNEWIGKNASSW 605
>AK096138-1|BAC04707.1| 460|Homo sapiens protein ( Homo sapiens
cDNA FLJ38819 fis, clone LIVER2008053, weakly similar to
Drosophila melanogaster forked mRNA for large Forked
protein. ).
Length = 460
Score = 29.9 bits (64), Expect = 8.4
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 5 NSEKYSLESFGKDERDIFRDIYKEYRSLNGSEPINYHDWLVMNNFGILSDTQESLFQR-K 63
+ ++ +E F ++E D F +KE L+ E + H ++N G+ S +F+R +
Sbjct: 225 SGQRNVMEVFREEEEDSFSGDFKEKLQLSAEEDGSVHHESILNRPGLGS----IVFRRNR 280
Query: 64 ISKRSTV-DNKREF 76
IS + D+KREF
Sbjct: 281 ISSPEDISDSKREF 294
>AF196481-1|AAF07341.1| 685|Homo sapiens RING finger protein
protein.
Length = 685
Score = 29.9 bits (64), Expect = 8.4
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 88 TGRGVGGLIGHAAIMTS-DYWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDW 141
+G G G G+ I + YW + M + +GI + PK++W +AS W
Sbjct: 523 SGTGCYGAAGNIFIDSGCHYWEVVMGSSTWYAIGIA--YKSAPKNEWIGKNASSW 575
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.318 0.137 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,287,608
Number of Sequences: 224733
Number of extensions: 1708209
Number of successful extensions: 5999
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5999
Number of HSP's gapped (non-prelim): 11
length of query: 242
length of database: 73,234,838
effective HSP length: 88
effective length of query: 154
effective length of database: 53,458,334
effective search space: 8232583436
effective search space used: 8232583436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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