Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001284-TA|BGIBMGA001284-PA|undefined
(242 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27440.1 68417.m03944 protochlorophyllide reductase B, chloro... 32 0.40
At5g36740.1 68418.m04402 PHD finger family protein 31 0.70
At5g36670.1 68418.m04388 PHD finger family protein 31 0.70
At5g54190.1 68418.m06747 protochlorophyllide reductase A, chloro... 31 0.93
At5g47910.1 68418.m05918 respiratory burst oxidase protein D (Rb... 29 2.2
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 29 2.2
At2g29760.1 68415.m03616 pentatricopeptide (PPR) repeat-containi... 29 2.8
At5g60010.1 68418.m07525 ferric reductase-like transmembrane com... 28 5.0
At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SD... 28 5.0
At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SD... 28 6.6
At3g45810.1 68416.m04958 ferric reductase-like transmembrane com... 28 6.6
At2g36590.1 68415.m04487 proline transporter, putative strong si... 27 8.7
At2g11620.1 68415.m01249 hypothetical protein 27 8.7
At1g32440.1 68414.m04004 pyruvate kinase, putative similar to py... 27 8.7
>At4g27440.1 68417.m03944 protochlorophyllide reductase B,
chloroplast / PCR B / NADPH-protochlorophyllide
oxidoreductase B (PORB) identical to SP:P21218
protochlorophyllide reductase B, chloroplast precursor
(EC 1.3.1.33) (PCR B) (NADPH-protochlorophyllide
oxidoreductase B) (POR B) [Arabidopsis thaliana]
Length = 401
Score = 31.9 bits (69), Expect = 0.40
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 10 SLESFGKDERDIFRDIYKEYRSLNGSEPINYHDWLVMNNFGILSDTQESLFQRKISKRST 69
S SF KD I + +S +GS + + + N I + T + ++K +
Sbjct: 24 SSSSF-KDSSLFGASITDQIKSEHGSSSLRFKREQSLRNLAIRAQTAATS-SPTVTK--S 79
Query: 70 VDNKREFINTVKKGDVLITGRGVG-GLIGHAAIMTSDYWVLEMPGGDGWELGIPDNNRQV 128
VD K+ T++KG+V++TG G GL A+ + W + M D + + +
Sbjct: 80 VDGKK----TLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAERAAKSVGM 135
Query: 129 PKDQWFDMH 137
PKD + MH
Sbjct: 136 PKDSYTVMH 144
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 26 YKEYRSLNGSEPINYHDWLVMNNFGILSDTQESLFQRKI-SKRSTVDNKREFINTVKKGD 84
Y+ Y+ S P + + + FG+L + L +R I KRS +R + D
Sbjct: 437 YQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTND 496
Query: 85 VLITGRGVG 93
+L++ +G G
Sbjct: 497 ILVSTKGTG 505
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 26 YKEYRSLNGSEPINYHDWLVMNNFGILSDTQESLFQRKI-SKRSTVDNKREFINTVKKGD 84
Y+ Y+ S P + + + FG+L + L +R I KRS +R + D
Sbjct: 437 YQVYKKQLESNPNDQKNSTTGSGFGLLPEEDLHLLERTIQKKRSDTGKQRSKLKDRDTND 496
Query: 85 VLITGRGVG 93
+L++ +G G
Sbjct: 497 ILVSTKGTG 505
>At5g54190.1 68418.m06747 protochlorophyllide reductase A,
chloroplast / PCR A / NADPH-protochlorophyllide
oxidoreductase A (PORA) identical to SP:Q42536
protochlorophyllide reductase A, chloroplast precursor
(EC 1.3.1.33) (PCR A) (NADPH-protochlorophyllide
oxidoreductase A) (POR A) [Arabidopsis thaliana]
Length = 405
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 67 RSTVDNKREFINTVKKGDVLITGRGVG-GLIGHAAIMTSDYWVLEMPGGDGWELGIPDNN 125
+S++D K+ T++KG+V++TG G GL A+ + W + M D + +
Sbjct: 81 KSSLDRKK----TLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAQS 136
Query: 126 RQVPKDQWFDMH 137
+PKD + MH
Sbjct: 137 AGMPKDSYTVMH 148
>At5g47910.1 68418.m05918 respiratory burst oxidase protein D
(RbohD) / NADPH oxidase identical to respiratory burst
oxidase protein D from Arabidopsis thaliana [gi:3242789]
Length = 921
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 106 YWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDWTTVYRCTDAEAAVMA 156
YWV G W GI D ++ ++ ++H + T+VY DA A++A
Sbjct: 791 YWVTREQGSFEWFKGIMDEISELDEEGIIELH-NYCTSVYEEGDARVALIA 840
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 33 NGSEPINYHDWLVMNNFGILSDTQESLFQRKISKRSTVDNKR-EFINTVKK 82
N ++ NYH L M GI+++T+ L Q K++T R E +N + K
Sbjct: 55 NVTDHFNYHAALAMETTGIVNETRRDLRQVGRGKKTTRRGGRFESLNAIDK 105
>At2g29760.1 68415.m03616 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 738
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 65 SKRSTVDNKREFINTVKKGDVLITGRGVGGLIGH 98
SK ++ RE N+V+K DV + +GGL H
Sbjct: 411 SKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444
>At5g60010.1 68418.m07525 ferric reductase-like transmembrane
component family protein similar to respiratory burst
oxidase protein D RbohD from Arabidopsis thaliana,
EMBL:AF055357 [gi:3242789], respiratory burst oxidase
homolog from Solanum tuberosum [GI:16549089]; contains
Pfam profile PF01794 Ferric reductase like transmembrane
component
Length = 839
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 106 YWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDWTTVYRCTDAEAAVMA 156
+WV W G+ D+ + K +MH + T++Y DA +A++A
Sbjct: 756 FWVTREQASFDWFKGVMDDIAEYDKTHVIEMH-NYLTSMYEAGDARSALIA 805
>At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 296
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 52 LSDTQESLFQRKISKRSTVDNKREFINT-VKKGDVLITGRGVGGLI 96
+SD Q +S +V + EF+ T K D+LI GVGG+I
Sbjct: 56 ISDQSIVFHQLDVSDPVSVTSLAEFVKTHFGKLDILINNAGVGGVI 101
>At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SDR)
family protein similar to carbonyl reductase GI:1049108
from [Mus musculus]
Length = 296
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 52 LSDTQESLFQRKISKRSTVDNKREFINT-VKKGDVLITGRGVGGLIGHA 99
+SD Q ++ +++ + EF+ T K D+L+ G+GG+I A
Sbjct: 56 ISDQSLLFHQLDVADPASITSLAEFVKTQFGKLDILVNNAGIGGIITDA 104
>At3g45810.1 68416.m04958 ferric reductase-like transmembrane
component family protein similar to respiratory burst
oxidase protein D RbohD from Arabidopsis thaliana,
EMBL:AF055357 [gi:3242789], similar to respiratory burst
oxidase protein D RbohD from Arabidopsis thaliana,
EMBL:AF055357 [gi:3242789], respiratory burst oxidase
homolog from Solanum tuberosum [GI:16549089]; contains
Pfam profile PF01794 Ferric reductase like transmembrane
component
Length = 912
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 106 YWVLEMPGGDGWELGIPDNNRQVPKDQWFDMHASDWTTVYRCTDAEAAVMA 156
YWV W G+ D+ K +MH + T++Y DA +A++A
Sbjct: 782 YWVTREQASFEWFKGVMDDIAVYDKTNVIEMH-NYLTSMYEAGDARSALIA 831
>At2g36590.1 68415.m04487 proline transporter, putative strong
similarity to proline transporter 1 GI:1769901 from
[Arabidopsis thaliana]; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 436
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 114 GDGWELGIPDNNRQVPKDQWF 134
G+G ++ IPD Q+ D WF
Sbjct: 11 GEGVDIEIPDTAHQISSDSWF 31
>At2g11620.1 68415.m01249 hypothetical protein
Length = 491
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 120 GIPDNNRQVPKDQWFDMHASDWTTVYR---CTDAEAAVMAARWADRTYYN 166
G+ N Q+P DQ H+ W+T CT V A D+T+++
Sbjct: 46 GLTINKLQIPNDQQNQFHSYQWSTTTNHIPCTRGAPTVQPAA-NDQTFFS 94
>At1g32440.1 68414.m04004 pyruvate kinase, putative similar to
pyruvate kinase isozyme G, chloroplast precursor
[Nicotiana tabacum] SWISS-PROT:Q40546
Length = 571
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 52 LSDTQESLF--QRKISKRSTVD-NKREFINTVKKGDVLITGRGVGGL 95
L + QE F +R +S + TV N +F+N V+ GD+L+ G+ L
Sbjct: 181 LEEGQEFNFTIKRGVSLKDTVSVNYDDFVNDVEVGDILLVDGGMMSL 227
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.137 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,380,579
Number of Sequences: 28952
Number of extensions: 279282
Number of successful extensions: 673
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 14
length of query: 242
length of database: 12,070,560
effective HSP length: 79
effective length of query: 163
effective length of database: 9,783,352
effective search space: 1594686376
effective search space used: 1594686376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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