Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001283-TA|BGIBMGA001283-PA|IPR006958|Mak16 protein
         (209 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050528-1|AAH50528.1|  300|Homo sapiens RNA binding motif prote...   166   6e-41
BC039740-1|AAH39740.1|  300|Homo sapiens RNA binding motif prote...   166   6e-41
BC028230-1|AAH28230.1|  300|Homo sapiens RNA binding motif prote...   166   6e-41
AK027469-1|BAB55134.1|  300|Homo sapiens protein ( Homo sapiens ...   166   6e-41
AF251062-1|AAK34952.1|  300|Homo sapiens RNA binding protein pro...   166   6e-41
BC015965-1|AAH15965.1|  127|Homo sapiens Unknown (protein for IM...    81   4e-15

>BC050528-1|AAH50528.1|  300|Homo sapiens RNA binding motif protein
           13 protein.
          Length = 300

 Score =  166 bits (403), Expect = 6e-41
 Identities = 74/119 (62%), Positives = 96/119 (80%)

Query: 5   FPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVK 64
           FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYLIR+RKL L+R +
Sbjct: 73  FPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQR 132

Query: 65  ELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 123
           +LVP+ +K+         KAL+AA++DNAIEK+LLERLK+ TY DIYNFP  AFD AL+
Sbjct: 133 KLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALE 191


>BC039740-1|AAH39740.1|  300|Homo sapiens RNA binding motif protein
           13 protein.
          Length = 300

 Score =  166 bits (403), Expect = 6e-41
 Identities = 74/119 (62%), Positives = 96/119 (80%)

Query: 5   FPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVK 64
           FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYLIR+RKL L+R +
Sbjct: 73  FPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQR 132

Query: 65  ELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 123
           +LVP+ +K+         KAL+AA++DNAIEK+LLERLK+ TY DIYNFP  AFD AL+
Sbjct: 133 KLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALE 191


>BC028230-1|AAH28230.1|  300|Homo sapiens RNA binding motif protein
           13 protein.
          Length = 300

 Score =  166 bits (403), Expect = 6e-41
 Identities = 74/119 (62%), Positives = 96/119 (80%)

Query: 5   FPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVK 64
           FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYLIR+RKL L+R +
Sbjct: 73  FPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQR 132

Query: 65  ELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 123
           +LVP+ +K+         KAL+AA++DNAIEK+LLERLK+ TY DIYNFP  AFD AL+
Sbjct: 133 KLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALE 191


>AK027469-1|BAB55134.1|  300|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14563 fis, clone NT2RM4000215, weakly similar to
           MAK16 PROTEIN. ).
          Length = 300

 Score =  166 bits (403), Expect = 6e-41
 Identities = 74/119 (62%), Positives = 96/119 (80%)

Query: 5   FPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVK 64
           FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYLIR+RKL L+R +
Sbjct: 73  FPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQR 132

Query: 65  ELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 123
           +LVP+ +K+         KAL+AA++DNAIEK+LLERLK+ TY DIYNFP  AFD AL+
Sbjct: 133 KLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALE 191


>AF251062-1|AAK34952.1|  300|Homo sapiens RNA binding protein
           protein.
          Length = 300

 Score =  166 bits (403), Expect = 6e-41
 Identities = 74/119 (62%), Positives = 96/119 (80%)

Query: 5   FPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVK 64
           FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQYLIR+RKL L+R +
Sbjct: 73  FPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQR 132

Query: 65  ELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 123
           +LVP+ +K+         KAL+AA++DNAIEK+LLERLK+ TY DIYNFP  AFD AL+
Sbjct: 133 KLVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALE 191


>BC015965-1|AAH15965.1|  127|Homo sapiens Unknown (protein for
           IMAGE:4045270) protein.
          Length = 127

 Score = 80.6 bits (190), Expect = 4e-15
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 5   FPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLK 59
           FP + WE+V+LS+N+EKA+ QI+ENL+YWP FI+ KCKQRF KITQ   + +K K
Sbjct: 73  FPRRLWERVRLSKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQKKKKKKKKK 127


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.136    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,123,378
Number of Sequences: 224733
Number of extensions: 441629
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 6
length of query: 209
length of database: 73,234,838
effective HSP length: 87
effective length of query: 122
effective length of database: 53,683,067
effective search space: 6549334174
effective search space used: 6549334174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 63 (29.5 bits)