Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001283-TA|BGIBMGA001283-PA|IPR006958|Mak16 protein
         (209 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23280.1 68414.m02912 MAK16 protein-related contains similari...   106   9e-24
At1g13200.1 68414.m01531 F-box family protein contains F-box dom...    29   1.7  

>At1g23280.1 68414.m02912 MAK16 protein-related contains similarity
           to MAK16 protein SP:P10962 from [Saccharomyces
           cerevisiae]
          Length = 303

 Score =  106 bits (255), Expect = 9e-24
 Identities = 54/118 (45%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 6   PAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKE 65
           P K WE+VKL  N+EKA+  I+++LLYWP  ++ K KQR  K+TQ  IRMRKL L+  + 
Sbjct: 73  PNKLWERVKLPVNYEKALEMIDKHLLYWPKLLQHKVKQRLTKMTQMRIRMRKLALKTREV 132

Query: 66  LVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTY-NDIYNFPQMAFDAAL 122
           +V   R+          KA+ AA++D AIE +L+ERLKKG Y  +IYN     F+  L
Sbjct: 133 VVTTPRRQIKRESRREEKAIKAAQLDKAIETELMERLKKGIYPTEIYNLSDSVFNKLL 190


>At1g13200.1 68414.m01531 F-box family protein contains F-box domain
           Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein
           interaction domain
          Length = 435

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 3   IMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQY 51
           ++ PA +W ++     F+  IH+ N     W   +K+     FVK T Y
Sbjct: 167 VVNPATRWLRLLPPAGFQILIHKFNPTEREWNVVMKSIFHLAFVKATDY 215


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.136    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,996
Number of Sequences: 28952
Number of extensions: 83061
Number of successful extensions: 177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 2
length of query: 209
length of database: 12,070,560
effective HSP length: 78
effective length of query: 131
effective length of database: 9,812,304
effective search space: 1285411824
effective search space used: 1285411824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)