GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001283-TA|BGIBMGA001283-PA|IPR006958|Mak16 protein
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...   110   1e-25
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    34   0.013
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   1.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   8.1  

>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score =  110 bits (265), Expect = 1e-25
 Identities = 47/105 (44%), Positives = 72/105 (68%)

Query: 5   FPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVK 64
           FP+K W+++KLS+N+ KA+ QI++ LLYWP     +CKQR  ++TQYL++ R+L L+   
Sbjct: 72  FPSKLWQRIKLSKNYAKALEQIDQQLLYWPGRQIHRCKQRLTRLTQYLLKARRLALKHQP 131

Query: 65  ELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYND 109
            L+PI+ K          KAL+AA+++  IEK+L++RLK G Y D
Sbjct: 132 ALIPIKPKQAHREASRERKALIAAKLEKNIEKELVKRLKSGVYGD 176


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 16  SRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQ 50
           +RN EKAI QI+E LL W   +  + +Q F+ +T+
Sbjct: 398 ARNREKAIWQIHEKLLCWERALPIELRQYFIALTE 432


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 8   KQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKE 65
           KQW K      +E  +H++ E  +     I   C    + + Q ++R R  KL ++KE
Sbjct: 402 KQWHKKDDFTEYEDIVHELIELPVVCAQSIDGGCVYEVINLVQSVLR-RVTKLFQLKE 458


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 4   MFPAKQWEKVKLSRNFEKAIHQINENLLYW-PAFIKAKCKQRFVKITQY-LIRMRKLKLR 61
           +F A+ +E+  L    EK   Q    LL       K K ++   KI +    R +K +L+
Sbjct: 546 IFAARLFEQRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLK 605

Query: 62  RVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKK 104
             KE    +R+          KAL A R + A +K+  +RLK+
Sbjct: 606 LAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKR 648


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,265
Number of Sequences: 5004
Number of extensions: 17905
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 5
length of query: 209
length of database: 2,362,478
effective HSP length: 70
effective length of query: 139
effective length of database: 2,012,198
effective search space: 279695522
effective search space used: 279695522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)