GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001283-TA|BGIBMGA001283-PA|IPR006958|Mak16 protein
         (209 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057...   115   3e-26
07_01_1096 - 10063016-10063117,10063530-10063580,10063924-100640...    74   7e-14
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032...    27   8.4  

>07_01_1089 +
           10004773-10004831,10004924-10005033,10005631-10005749,
           10005833-10005930,10006834-10006921,10006993-10007127,
           10007211-10007313,10007506-10007618,10007821-10007868
          Length = 290

 Score =  115 bits (276), Expect = 3e-26
 Identities = 56/118 (47%), Positives = 77/118 (65%)

Query: 6   PAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKE 65
           P K WE+VKL RN+EKA+  IN++L +WP  +  K KQR  K+TQY IRMRKL+L+  ++
Sbjct: 72  PNKLWERVKLPRNYEKAMEVINKHLEFWPKLLVHKIKQRLTKMTQYRIRMRKLQLKVREK 131

Query: 66  LVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 123
           ++ + RK          KA  AA+++  IE +L ERLKKG Y DIYN+P   FD  L+
Sbjct: 132 VMTMPRKETQRHLRRMDKAEKAAQLEKNIESELKERLKKGVYGDIYNYPFKEFDTILE 189


>07_01_1096 -
           10063016-10063117,10063530-10063580,10063924-10064033,
           10064367-10064454,10064543-10064603,10065198-10065295,
           10065394-10065512,10066593-10066702,10066801-10066859
          Length = 265

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 6   PAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLR 61
           P K WE+VKL RN+EKAI  IN +L +WP  +  K KQR  K+TQY IRMRKL+L+
Sbjct: 72  PNKLWERVKLPRNYEKAIEVINRHLEFWPKLLVHKIKQRLTKMTQYRIRMRKLRLK 127


>12_02_0918 -
           24299620-24299748,24299890-24300037,24303105-24303280,
           24305870-24305917,24306005-24306116,24306209-24306468
          Length = 290

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 6   PAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRV 63
           PA  W  +  +++F + I  +NE +     +I+ K K+ F  + Q    +R+ +L  V
Sbjct: 150 PATVWRNMDENQSFRQQIDALNERIRILERYIEEK-KREFDNLQQQYDTLRRRELYAV 206


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,460,288
Number of Sequences: 37544
Number of extensions: 87569
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 3
length of query: 209
length of database: 14,793,348
effective HSP length: 79
effective length of query: 130
effective length of database: 11,827,372
effective search space: 1537558360
effective search space used: 1537558360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)