GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001283-TA|BGIBMGA001283-PA|IPR006958|Mak16 protein
         (209 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 28   4.9  

>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 12  KVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQR 71
           ++KL R F K  +  +E LL   +      K R  K    L+  +K+    +    P+Q+
Sbjct: 761 RMKL-RPFLKDTNTTDETLLQEMSIAMTTEKDRQSK----LVPRQKIAANEINHSPPVQK 815

Query: 72  KIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYND 109
                       A +AA  +  +E Q LER + G  ND
Sbjct: 816 VKTPGRRGVTIAAELAAMKEQRVENQKLERKRDGRGND 853


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,237,859
Number of Sequences: 59808
Number of extensions: 113096
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 1
length of query: 209
length of database: 16,821,457
effective HSP length: 79
effective length of query: 130
effective length of database: 12,096,625
effective search space: 1572561250
effective search space used: 1572561250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)