GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001283-TA|BGIBMGA001283-PA|IPR006958|Mak16 protein
         (209 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-4|AAB47596.1|  323|Caenorhabditis elegans Hypothetical pr...   134   4e-32
AL110478-12|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    33   0.20 
U64843-11|AAL08038.1|  365|Caenorhabditis elegans Hypothetical p...    30   1.4  
AF036704-2|ABA00183.1|  281|Caenorhabditis elegans Hypothetical ...    28   5.6  

>U41534-4|AAB47596.1|  323|Caenorhabditis elegans Hypothetical
           protein C16A3.6 protein.
          Length = 323

 Score =  134 bits (324), Expect = 4e-32
 Identities = 61/120 (50%), Positives = 87/120 (72%), Gaps = 1/120 (0%)

Query: 5   FPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLR-RV 63
           +P + WEK KLS++  KA+ QI++ LL+W  +++ KCK R ++I QYLIRMRK+ +R   
Sbjct: 72  YPRRLWEKTKLSKDMNKALEQISDQLLHWSEYVRHKCKARLIRIHQYLIRMRKMAVRGNQ 131

Query: 64  KELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYNFPQMAFDAALK 123
           K+L+PI RK+         KALVAA++D+AIEK+LL RLK+GTY D+YNF Q AF+  L+
Sbjct: 132 KKLIPIGRKVERREKRREEKALVAAKLDHAIEKELLARLKQGTYGDVYNFRQEAFEQMLE 191


>AL110478-12|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 13  VKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQRK 72
           +  +  FEK + + N+N +   + IK K K+  VK+ + +    K  L +VKE V   +K
Sbjct: 577 ISFNYKFEKTLEKTNKNKIEMKSAIK-KVKEAIVKVEKAIGLSYKYYLEKVKEAVEEVKK 635

Query: 73  IXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDI 110
           +         + +  A+ +    K  LE+ K   Y  I
Sbjct: 636 VLGVNYEDCLEKIGKAQEETEKVKTELEQEKGIDYQSI 673


>U64843-11|AAL08038.1|  365|Caenorhabditis elegans Hypothetical
           protein K06C4.17 protein.
          Length = 365

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 13  VKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYL 52
           + L + FEK IH+IN     WP    A  K  F+K+ QY+
Sbjct: 196 LSLPKFFEKGIHEING----WPWQTNAVEKYTFLKVVQYV 231


>AF036704-2|ABA00183.1|  281|Caenorhabditis elegans Hypothetical
          protein ZK185.4 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 4  MFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKL 58
          M   K++E V   R     + Q+N  LL+W  F+       F  +T  ++   K+
Sbjct: 1  MLMEKRFESVHKKRPQAVELFQLNTTLLFWVGFVPPLFAAVFAILTAIILHQDKI 55


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.136    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,660
Number of Sequences: 27539
Number of extensions: 93632
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 4
length of query: 209
length of database: 12,573,161
effective HSP length: 78
effective length of query: 131
effective length of database: 10,425,119
effective search space: 1365690589
effective search space used: 1365690589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)