Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001282-TA|BGIBMGA001282-PA|IPR000408|Regulator of
chromosome condensation, RCC1, IPR003439|ABC transporter related,
IPR001680|WD-40 repeat, IPR011048|Cytochrome cd1-nitrite
reductase-like, C-terminal haem d1
         (531 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   4.0  
AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esteras...    23   5.3  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    23   5.3  
AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esteras...    23   5.3  
AJ850287-1|CAH64507.1|  509|Tribolium castaneum putative esteras...    23   5.3  
AF260823-1|AAG02021.1|  138|Tribolium castaneum alpha-esterase l...    23   5.3  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 310 LKYWKDATQLYLAQIDRLVAKTEGHKLYENKYYGGPVY 347
           +K + D  Q     +  L +    H    N YY  P+Y
Sbjct: 385 IKMYADMHQYGYNTLSPLPSSVHSHSTIGNDYYNSPLY 422


>AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 152 SSEVATLNLAAQDKTKSAKRFLLPIL 177
           S +  TLN+  +D  K    FL P++
Sbjct: 79  SEDCLTLNVYTRDLPKEGSNFLKPVM 104


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 152 SSEVATLNLAAQDKTKSAKRFLLPIL 177
           S +  TLN+  +D  K    FL P++
Sbjct: 79  SEDCLTLNVYTRDLPKEGSNFLKPVM 104


>AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esterase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 152 SSEVATLNLAAQDKTKSAKRFLLPIL 177
           S +  TLN+  +D  K    FL P++
Sbjct: 79  SEDCLTLNVYTRDLPKEGSNFLKPVM 104


>AJ850287-1|CAH64507.1|  509|Tribolium castaneum putative esterase
           protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 152 SSEVATLNLAAQDKTKSAKRFLLPIL 177
           S +  TLN+  +D  K    FL P++
Sbjct: 78  SEDCLTLNVYTRDLPKEGSNFLKPVM 103


>AF260823-1|AAG02021.1|  138|Tribolium castaneum alpha-esterase like
           protein E4 protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 152 SSEVATLNLAAQDKTKSAKRFLLPIL 177
           S +  TLN+  +D  K    FL P++
Sbjct: 51  SEDCLTLNVYTRDLPKEGSNFLKPVM 76


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,070
Number of Sequences: 317
Number of extensions: 4202
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 531
length of database: 114,650
effective HSP length: 60
effective length of query: 471
effective length of database: 95,630
effective search space: 45041730
effective search space used: 45041730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)