GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001282-TA|BGIBMGA001282-PA|IPR000408|Regulator of
chromosome condensation, RCC1, IPR003439|ABC transporter related,
IPR001680|WD-40 repeat, IPR011048|Cytochrome cd1-nitrite
reductase-like, C-terminal haem d1
         (531 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           29   0.31 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.94 
AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding pr...    27   1.2  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 16 TDVTGRSRKGDHGQLTTWKTLRGHKGTVFEASWNPHHDDLLLSTSSDATVRVWAASSG 73
          T  T   +K     L T   LRGH+  V    WN  +   L S  S   + VW    G
Sbjct: 40 TFTTSHCKKNVDYPLRTNYNLRGHRSDVILVKWNEPYQK-LASCDSSGIIFVWIKYEG 96


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 392  LHQWANYSNLCGNFEIATVCFIALGDLSEAATVLAKSKKQENLCLAAEIAKAAGRATLAD 451
            + +WA   N+    +    C   +  L     V A  +K     L  E+ KA       +
Sbjct: 922  MEKWATKENMLR--QKIDECTEKIAGLGALPNVDASYQKMSLKSLFKELEKANQHLKKYN 979

Query: 452  HIEKKAQNTIPSTSDETEEILK 473
            H+ KKA +   S S++ E++ K
Sbjct: 980  HVNKKALDQFLSFSEQKEKLYK 1001


>AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding
           protein AgamOBP45 protein.
          Length = 356

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 289 QYASQNDLLCPYLLSLTPCV--SLKYWKDATQLYLAQIDRLVAKTEGHKLYENKYYGGPV 346
           +YA+ +    P    L  CV  +L++W D T +  A I+         +LYEN+      
Sbjct: 61  EYAANSFPDDPETKCLLRCVGLNLRWWNDTTGMQTAVIEGFFHPDPLDELYENR--TAEC 118

Query: 347 YRKALTRLSTHD 358
            RK L+   T D
Sbjct: 119 LRKELSHADTTD 130


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 498,944
Number of Sequences: 2123
Number of extensions: 18502
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 3
length of query: 531
length of database: 516,269
effective HSP length: 67
effective length of query: 464
effective length of database: 374,028
effective search space: 173548992
effective search space used: 173548992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)