Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001281-TA|BGIBMGA001281-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat
         (532 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   4.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   8.3  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 204 DKRPSVSERLHKI-RNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESV---TVEDD 259
           D  P VS  LH + R+  +  E+  +  K  + L +   V+S  +   D  V   +VE  
Sbjct: 138 DYPPLVSGALHLLFRHFSQRQEVLQAF-KQVQLLVSDSDVESYKQIKSDLDVLRQSVEKS 196

Query: 260 MFDIYKDHEADEFGHKKYQPEE 281
              +YK   ++E G+KK + +E
Sbjct: 197 ELWVYKSKASEEHGNKKKKNKE 218


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 358 LLATIGKLGGVRIWSKTGKLIASCAV 383
           +L T+   GG  +  + GKL A C +
Sbjct: 301 ILKTVVAYGGTSVMHQRGKLSAGCHI 326


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 182  EIMTVSWCPQYEVVIKKLLKESDKRPSVSERLHKIRNEPE-PDEIEDSNPKSSENLEASG 240
            +IM +    QY VV++   K      S   R H     PE P         +S+ +  S 
Sbjct: 1043 QIMNLKTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQPPHDTTCTTLTSQTIRISW 1102

Query: 241  M 241
            M
Sbjct: 1103 M 1103


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,705
Number of Sequences: 429
Number of extensions: 6160
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 532
length of database: 140,377
effective HSP length: 61
effective length of query: 471
effective length of database: 114,208
effective search space: 53791968
effective search space used: 53791968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)