GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001281-TA|BGIBMGA001281-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat
         (532 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    26   0.75 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   1.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           24   2.3  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    24   3.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    24   3.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    24   3.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   9.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   9.2  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 200 LKESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVE 257
           L  S   P+VSER      +P+ D  EDS      + +ASG  K      F ++ T E
Sbjct: 3   LPSSASNPAVSER------DPDEDNSEDSKDPHLTDQQASGHKKRKRRVLFSKAQTYE 54


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 72  ITNIAQEFKINSTHSHEVHHNE-----KEEVTGVGYSNEQFAITVGSFGTVVKWDLKSNV 126
           + N      ++S H   +HHN      K+E +G   SN  F+I         K D+K   
Sbjct: 330 MVNRCHPLSLSSDHQAMLHHNPMSHHLKQEPSGFTSSNHPFSINRLLPTAESKADIKM-Y 388

Query: 127 VKNYQHLLKSFKPVCMSCSSH 147
              +Q+   +  P+  S  SH
Sbjct: 389 ADMHQYGYNTLSPLPSSVHSH 409


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 77 QEFKINSTHSHEVHHNEKEE 96
          Q  + N TH++E++H+ KEE
Sbjct: 33 QNTEHNYTHNNEMYHSVKEE 52


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu
          protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 77 QEFKINSTHSHEVHHNEKEE 96
          Q  + N TH++E++H  KEE
Sbjct: 33 QNTEQNYTHNNEMYHRVKEE 52


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
          transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 77 QEFKINSTHSHEVHHNEKEE 96
          Q  + N TH++E++H  KEE
Sbjct: 33 QNTEQNYTHNNEMYHRVKEE 52


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 2/105 (1%)

Query: 130 YQHLLKSFKPVCMSCSSHLLLHVAVGTKQGVIFVLDLNGQGKTIYKVRGQDDEIMTVSWC 189
           Y   L+ ++  C   ++H++  +   ++   I   ++    + I+K        +  S C
Sbjct: 158 YHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQMQLKQSTC 217

Query: 190 PQYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSE 234
               ++  + L    KR + S++  +I NE     +  SNP  SE
Sbjct: 218 EAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHL--SNPYPSE 260


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query: 68  KQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYS-----------NEQFAITVGSFGT 116
           ++W+ + +A    +   + H V  NE   +  +GY               F + VG+F  
Sbjct: 851 RRWMPSTMANILDLLMDYEHTVKINENISMLYIGYQIILMIGTVIGPGTIFLMLVGAFVA 910

Query: 117 VVKWDLKSNVVKNYQHLLKSFKPVCMSCSSHLLLHVA 153
               D  S+   N    +  F  VC +CSS + L  A
Sbjct: 911 AFGLDQWSSFYWNLLP-IAVFILVCATCSSDIQLFFA 946


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query: 68  KQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYS-----------NEQFAITVGSFGT 116
           ++W+ + +A    +   + H V  NE   +  +GY               F + VG+F  
Sbjct: 851 RRWMPSTMANILDLLMDYEHTVKINENISMLYIGYQIILMIGTVIGPGTIFLMLVGAFVA 910

Query: 117 VVKWDLKSNVVKNYQHLLKSFKPVCMSCSSHLLLHVA 153
               D  S+   N    +  F  VC +CSS + L  A
Sbjct: 911 AFGLDQWSSFYWNLLP-IAVFILVCATCSSDIQLFFA 946


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.133    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,021
Number of Sequences: 317
Number of extensions: 5438
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 8
length of query: 532
length of database: 114,650
effective HSP length: 60
effective length of query: 472
effective length of database: 95,630
effective search space: 45137360
effective search space used: 45137360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)