Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001281-TA|BGIBMGA001281-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 40 7e-04
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 36 0.011
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 36 0.014
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 36 0.019
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 34 0.043
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 33 0.099
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 32 0.17
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 32 0.23
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 31 0.30
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 31 0.30
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 31 0.53
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 30 0.70
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 30 0.92
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 29 1.2
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 29 1.2
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 29 2.1
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 29 2.1
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa... 29 2.1
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 28 2.8
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 28 2.8
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 28 3.7
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 28 3.7
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 28 3.7
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 27 4.9
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 4.9
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 4.9
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 4.9
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 27 4.9
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 6.5
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 6.5
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 6.5
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 27 6.5
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 27 6.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 6.5
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 6.5
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 8.6
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 27 8.6
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 8.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 8.6
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 27 8.6
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 27 8.6
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 8.6
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 8.6
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 40.3 bits (90), Expect = 7e-04
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 16/183 (8%)
Query: 58 ILTGAADGTVKQWVITN---IAQEFKINSTHSHEVHHNEKEEVTGVGY--SNEQFAITVG 112
+ TGA D + W + + E K+ S + +H + V V + +E +V
Sbjct: 198 LATGAEDQVICLWDVQTQSFTSSETKVISPIAK--YHRHTDIVNDVQFHPQHEALLASVS 255
Query: 113 SFGTVVKWDLKSN----VVKNYQHLLKSFKPVCMSCSSHLLLHVAVGTKQGVIFVLDLNG 168
T+ D + N K Q K+ V ++ + LL A K + + DL
Sbjct: 256 DDCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAINPFNDYLLATASADK--TVALWDLRN 313
Query: 169 QGKTIYKVRGQDDEIMTVSWCPQYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIEDS 228
+ ++ + G +DE+ + W P E ++ +D+R + + L KI E P++ ED
Sbjct: 314 PYQRLHTLEGHEDEVYGLEWSPHDEPILAS--SSTDRRVCIWD-LEKIGEEQTPEDAEDG 370
Query: 229 NPK 231
+P+
Sbjct: 371 SPE 373
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 36.3 bits (80), Expect = 0.011
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 194 VVIKKLLKESDKRPSVSERL-------HKIRNEPEPDEIEDSNPKSSENLEASGMVKSLP 246
+ ++K L+E KR ++ERL + N+ E + EDS+ KS E+S K+
Sbjct: 65 LALRKSLREQRKR-ELAERLAFSKELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTE 123
Query: 247 EDSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKIKPDL 290
D D+ VTVE I +D + +E + K R+ PD+
Sbjct: 124 YDEDDKHVTVE-----IVEDDDDEEIAYPKEGFVTPRISPPPDV 162
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 35.9 bits (79), Expect = 0.014
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 205 KRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIY 264
K+ ++ K+ + EP EIE +P+ + L A V L +D FD
Sbjct: 105 KKGKKGKKSKKVEEDDEPQEIE--SPQGPKELTA---VTELDDDEFDYKPKKGKKGKKAQ 159
Query: 265 KDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETEESIESLVEAL 324
++E++ + E+RVK K + ++E E L+ K+Q + K T E + E
Sbjct: 160 NNNESEAAAPPEIP--EVRVKTKKEKEREKKEREKLRKKQQQAKKKGSTGEDTLASSEVS 217
Query: 325 DKTHVS 330
+ +S
Sbjct: 218 SEVDIS 223
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 35.5 bits (78), Expect = 0.019
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 15/133 (11%)
Query: 48 LSPEW-PEKRCIL-TGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKE-----EVTGV 100
L+ +W P+ +L +G+ADGT + W I ++ F H+ + N+ V G+
Sbjct: 193 LAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSFACMDLHNKYLPSNQTNISHYGTVNGL 252
Query: 101 GY-SNEQFAITVGSFGTVVKWDLKSNVVKNYQHLLKSFKPVCMSCSSHLLLHVAV--GTK 157
+ S+ ++ + G+ + W+++S ++ L+ F P+ + ++ +H + +
Sbjct: 253 AWTSDARYLASCGTDDRIRVWNMESG-----RNTLREFGPIIHNQTTSFAVHPCMIQPSM 307
Query: 158 QGVIFVLDLNGQG 170
+FVL N G
Sbjct: 308 DSDVFVLFPNDDG 320
Score = 34.7 bits (76), Expect = 0.032
Identities = 30/147 (20%), Positives = 66/147 (44%), Gaps = 12/147 (8%)
Query: 58 ILTGAADGTVKQWVITNIAQ----EFKINSTHSHEVHHNEKEEVTGVG-YSNEQFAITVG 112
+++G A+ ++ W + NI Q + +++ ++ + K +T + + + T
Sbjct: 63 MVSGGANSSINVWDLQNIDQKEDEDLILDTLNAVPARTSHKFGITDLHWFPFDNGIFTSS 122
Query: 113 SFGTVVK-WDLKSNVVKNYQHLLKS--FKPVCMSCSSHLLLHVAVGTKQGVIFVLDLNGQ 169
SF +K WD+ S + + Y ++ + +SH L +A + I + D+
Sbjct: 123 SFDHTLKVWDV-STLQEAYTFTMEDMIYSHAWSPIASHCL--IATAYRSSSIRLCDMQS- 178
Query: 170 GKTIYKVRGQDDEIMTVSWCPQYEVVI 196
G + + G ++ V WCP+ E V+
Sbjct: 179 GSYTHSLSGHTGNVLAVDWCPKNEFVL 205
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 34.3 bits (75), Expect = 0.043
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 167 NGQGKTIYKVRGQDDEIMTVSWCPQYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIE 226
N + Y ++ +DDE+ + V KK K+S K + + E +E E
Sbjct: 50 NSDNDSNYDLKPEDDEVDE-----EVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE 104
Query: 227 DSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKI 286
DS +N ++S K+ P+++FD + DDM D+ D E E K + ++ + K
Sbjct: 105 DSEKPVRKNKKSSK--KASPKNAFD---ALADDMDDLSLDEEESESSEKSKKKKK-KSKS 158
Query: 287 KPD 289
K D
Sbjct: 159 KDD 161
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 33.1 bits (72), Expect = 0.099
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 217 RNEPEPDEIEDSNPK-SSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHK 275
R++ + D N K S+E + + V +LPE+ FDES+ ++ + E ++F ++
Sbjct: 45 RDQSRELAVSDFNEKQSTEPPKDTRAVSALPENFFDESIAKNKELI----EEEWNDFQNE 100
Query: 276 KYQPEEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETEESIESLVEALDKTHVSND 332
EE V+ + L+Q+ LAE K +E + + + E + L E K S D
Sbjct: 101 IGIIEENAVEQEITLQQQQLLAE--KDEENEIADNDLEPEVYDILYEEESKLGESRD 155
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 32.3 bits (70), Expect = 0.17
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 196 IKKLLKESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVT 255
I K ++D P S++ K + PEP + K S+ E S +S E S ES +
Sbjct: 40 IAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSS-ESESESSSSESES 98
Query: 256 VEDDMFDIYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETEE 315
+ + E+ + EE V +K + K+E + +E+EE
Sbjct: 99 SSSESESSSSESESSSSESSSSESEE-EVIVKTEEKKESSSESS---------SSSESEE 148
Query: 316 SIESLVEALDKTHVSNDES 334
E++V+ +K S+D S
Sbjct: 149 EEEAVVKIEEKKESSSDSS 167
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 31.9 bits (69), Expect = 0.23
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 192 YEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFD 251
YE +K L+E ++ ++ER + I E E +++E + ++ S + L E S
Sbjct: 112 YEPWHEKRLQEYEEN-ELAER-NDIPEEDEMEKLEQKTLDTKRQMQISDALDELREKSAR 169
Query: 252 ES-VTVEDDMF----DIYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQI 306
S V ++D + D Y E +E +K++ EEI + K +D E ++
Sbjct: 170 RSRVNIDDAIALLKEDAYGSIEEEESKKRKFEEEEIDREAKSLFSSQD--GEIIRRLNAE 227
Query: 307 LRNKNETEESIESLVEALDKTHVSN 331
+ E + I+ + E L +++ N
Sbjct: 228 TTVEKELPKPIDLVSEKLATSNIPN 252
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 31.5 bits (68), Expect = 0.30
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 58 ILTGAADGTVKQW--VITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSFG 115
I++G+ DGTVK W + ++ + + + + + N+ + VG+ N ++G
Sbjct: 243 IISGSEDGTVKIWHTLSYSLIKSYNFSLDRAWCIAQNKDNGLVTVGFDNGLITFSLGRDE 302
Query: 116 TVVKWDLKSNVV-KNYQHLLKS 136
V D VV NY ++ +
Sbjct: 303 PSVTMDSSGKVVWSNYNEVMSA 324
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 31.5 bits (68), Expect = 0.30
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 269 ADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETEESIESLVEALDKTH 328
ADEF Y P +I PD+K + LAE K K+++L+N+ +E +S E+ +
Sbjct: 150 ADEFAIVLYDPTTDADEIIPDIK--EVLAEKRK-KDELLKNRKGKKEISDSEPESDHDSC 206
Query: 329 VSND 332
VS D
Sbjct: 207 VSTD 210
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 30.7 bits (66), Expect = 0.53
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 152 VAVGTKQGVIFVLDLNGQGKTIYKVRGQDDEIMTVSW 188
+AVGT GVI++ D+ K++ ++G + + ++W
Sbjct: 181 LAVGTDSGVIYIWDIEST-KSVRSLKGHSERVAALAW 216
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 30.3 bits (65), Expect = 0.70
Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 58 ILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSFGTV 117
+++G+AD T+K W ++ N S +H++K YS + GS+
Sbjct: 270 LVSGSADTTLKLWDLSTC------NCVKSF-TYHSDKVSCLD-WYSKAPSVLLSGSYDKT 321
Query: 118 VKW-DLKSNVVKNYQHLLKSFKPVCMSCSSHLLLHVAVGTKQGVIFVLDLNGQGKTIYKV 176
K DL+ + + + V H + +GT G+++ D K+++++
Sbjct: 322 AKIADLRLEEAPSSFQVTSDVENVAWD--QHSENNFFIGTDNGIVYYCDARNLSKSVWQL 379
Query: 177 RGQDDEIMTVSWCP 190
+ D I +S P
Sbjct: 380 QAHDGPISCLSVNP 393
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 29.9 bits (64), Expect = 0.92
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 43 IVSVDLSPEWPEKRCILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGY 102
IV++D + ++R ++TG+ DGT+K W + N+ NS + N + Y
Sbjct: 106 IVAIDTNTV--DRRIVVTGSWDGTIKLW-LGNLP-----NSVQTLNNGSNSRILTVATHY 157
Query: 103 SNEQFAITVGSFGTVVKWDLKSN 125
S+ S G WD +S+
Sbjct: 158 SSPNLLGYTSSDGLCKFWDFRSS 180
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 453 VLTLAWHPTKENWLAFSTAESRVGILDTSGRGARALVPGLAGGVYSLCWGLRSHLYACAS 512
V+T+ PT LA AE V + D +G G G + +LC+G + + AS
Sbjct: 106 VITMTIDPTN-TLLATGGAEGLVKVWDIAGAYVTHSFRGHGGVISALCFGKHQNTWVLAS 164
Query: 513 G 513
G
Sbjct: 165 G 165
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 29.5 bits (63), Expect = 1.2
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 412 NRTISVG-DGTVRIWETNTLDHDDTKLAAGTITAYWQN---------VQGRVLTLAWHPT 461
N +SVG DG+VR+++ +LDH T + G T + +N V +L L+ +
Sbjct: 223 NVFVSVGADGSVRMFDLRSLDH-STIIYEGDSTFWKRNGDYTNASPPVSAPLLRLSACDS 281
Query: 462 KENWLA-FSTAESRVGILDTSGRG-ARALVPGLAGGVYSLCW--GLRSHLYACASGQLV- 516
N +A F S V ++D G A A + G G V ++ W G +S L C +V
Sbjct: 282 DVNLMATFHHNSSDVQMIDIRVPGTAYATLRGHKGDVNAVKWMPGSKSKLATCGDDCVVS 341
Query: 517 VYDAARP 523
++D +P
Sbjct: 342 LWDLDQP 348
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 72 ITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAI 109
ITN A+ I S H+ H +E+T SN+Q ++
Sbjct: 443 ITNSAKNEHIRSQRQHKTHAAPSKELTKESLSNDQLSV 480
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 202 ESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMF 261
+ ++R V E H E +E+EDS + E + + E+ DE + +D F
Sbjct: 360 DDEQRDYVMETFH------EDEELEDS--EDEEFARQQLLSRKEEEEEEDEEASDFEDSF 411
Query: 262 DIYKDHEADEFGHKKYQPE 280
+ D EAD+ +++ E
Sbjct: 412 ADFSDGEADDLDESRWRKE 430
>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 17 FGQCNHRIPGTAV--GVKVVILNVTVQRIVSVDLSPEWPEK---RCILTGA 62
F H I T++ +K +++V R++ +D SP +PE RC+ T A
Sbjct: 197 FDMPTHPIADTSIKDSIKKRVVSVLTSRVIEIDNSPSFPEYLSFRCLRTVA 247
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 28.3 bits (60), Expect = 2.8
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 191 QYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDE-------IEDSNPKSSENLEASGMVK 243
++E+ +K E K+P V+ +EPE +E + S KS +A +
Sbjct: 224 EWEIEFEKFKLEQKKQPDVASSDGDFSDEPESEERDEVPELVSSSKSKSKTKRKARTALS 283
Query: 244 SLPEDSF----DESVTVEDDMFD 262
S+ S +E +T+ DD FD
Sbjct: 284 SVSMSSSALFRNEGLTLLDDRFD 306
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.3 bits (60), Expect = 2.8
Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 356 KHLLATIGKLGGVRIWSKTGKLIASC-AVPQNKNMKIKSPSWPSLLWYKSNMLLIGDNRT 414
K++ ++ G RIW K S V + + + SW + + N+L G +
Sbjct: 304 KNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRV---PNLLATGAD-- 358
Query: 415 ISVGDGTVRIWETNTLDHDDTKLAAGTITAYWQNVQGRVLTLAWHPTKENWLAFSTAESR 474
+G +W+ +L + +A + W + ++ WHP +++ + A+++
Sbjct: 359 ----NGVWSVWDLRSLK-SSSSVATPVASFKWHRAP--IYSIEWHPNEDSVIGVVGADNQ 411
Query: 475 VGILDTS 481
+ + D S
Sbjct: 412 ISLWDLS 418
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 27.9 bits (59), Expect = 3.7
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 201 KESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDM 260
K+ K S S+ + + E EI +S +E E SG+ E+S +ESV ++
Sbjct: 136 KQISKDSSQSQNVDSGKTNHE--EIHESRHLQTEIEEPSGL-----EESSEESVLYSEEF 188
Query: 261 FDIYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQ 305
++ + E +E H + E I L+Q D ++EQ
Sbjct: 189 YEKSDEEEDEEKSHSAEELEFGEEDIMYQLQQLDDETVSYDIQEQ 233
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 3.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 492 LAGGVYSLCWGLRSHLYACASGQLVVY 518
L+G Y +CW + H+ A + Q+ +Y
Sbjct: 102 LSGPAYEVCWSQQGHILATSWKQISIY 128
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 87 HEVHHNEKEEVTGVG-YSNEQFAITVGSFGTVVKWDL 122
H + + + +TG+ + +E+ A+TVG G + WDL
Sbjct: 113 HTLKSSSHKGITGIAVHPSEKLALTVGGDGKLRLWDL 149
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 280 EEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETEESIESLVEALDKTHVSNDES 334
EE V++K +E+Y C LKE +L + NE + I EA D + ++ S
Sbjct: 81 EEYEVEMKA--AKEEYEYRCKTLKEMVLSHLNEKKRKI---YEAKDMFDIGSESS 130
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 203 SDKRPSVSERLHK--IRNEPEPDE-IEDSNPKSSENLEASGMVKSLPEDSFD 251
SD + S S LH + + +PDE ++ S+PK S++ + +VK + ++SF+
Sbjct: 50 SDVQTSFSIFLHSTVVGFDSKPDEGVQFSSPKCSQSELIANVVKQMFDESFE 101
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 4.9
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 91 HNEKEEVTGVGYSNEQFAITVGSFGTVVK-WDLKSNVVKNYQHLLKSFKPVCMSCSSHLL 149
H ++ V +S + I SF + V+ WD K+ + L+ C+
Sbjct: 386 HGHQKVVNHASFSPDGRCIATASFDSSVRLWDGKTG---KFLATLRGHVAAVYQCAWSTD 442
Query: 150 LHVAVGTKQGVIF-VLDLNGQGKTIYKVRGQDDEIMTVSWCP 190
+ V + Q V D+ + K + + G +D++ V W P
Sbjct: 443 SRLLVSSSQDTTLKVWDVRSK-KMKFDLPGHEDQVFAVDWSP 483
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 53 PEKRCILTGAADGTVKQW 70
P KR I T ++DGT+K W
Sbjct: 64 PNKRWIATSSSDGTIKIW 81
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 207 PSVSERLHKIRNEPEPDEIEDSNPKSSENLEASG 240
P V +H I + P+ DE EDS + + + A G
Sbjct: 129 PDVLNEIHNIEHLPKKDESEDSGKEINNMVSAVG 162
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 231 KSSENLEASGMVKSLPEDSFDESVTVEDDM 260
+SSE E +V SL E+ DES ++ED +
Sbjct: 252 ESSEPKEKEEIVGSLEEEGTDESASLEDSL 281
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 6.5
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 222 PDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEE 281
P +++ +PK +N +SG +S DS ++ +D + +D + FG + +E
Sbjct: 29 PKKVDSFSPKKKKNTTSSGSSES---DSMSQNDKKKDSSLNESEDEDFAGFGESASENDE 85
Query: 282 IRVKIKPDLKQEDYLAECLKLKEQILRNKNETEE 315
+ E+ ++ KE + K +E
Sbjct: 86 LESAESEAENDEESSSQKSNSKESHAQRKKLQKE 119
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 204 DKRPSVSERLHKIRNEPEPDEIEDSNPKS---SENLEASGMVKSLPEDSFDESVTVE 257
DK V + + NEP+P +++ PKS E + S P++ +ES + E
Sbjct: 379 DKINDVKKNIEVSANEPQPRPVKEDVPKSQVGGETDTTDVINNSTPKEETEESPSTE 435
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 413 RTISVGDGTVRIWETNTLDHDDTKLAAGTITAY 445
R ++VGD ++ NT D K TITAY
Sbjct: 399 RLLAVGDENGLVYVVNTRTEDPNKAILRTITAY 431
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 247 EDSFDESVTVEDDMFDI-YKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQ 305
ED FDE ++DD F + K A ++ ++R + + Q + + +EQ
Sbjct: 25 EDEFDEDAEIDDDGFTVERKRRRAHSVSYRVVSVRDLRASLNEKINQLTSIIDL--TREQ 82
Query: 306 IL 307
+L
Sbjct: 83 VL 84
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.1 bits (57), Expect = 6.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 207 PSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSL-PE-DSFDESVTVEDDMFDIY 264
P +R HK+RN +IED + S+ S +K PE D D S+++ D Y
Sbjct: 212 PEKPKRSHKLRNSITFAKIEDHPERKSQLRRLSSSLKCFDPEYDYNDPSLSIRRDSSTYY 271
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.1 bits (57), Expect = 6.5
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 36 LNVTVQRIVSVDLSPEWPEKRCILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKE 95
L V + VD P +LTG++D T + W ++ HS V + +
Sbjct: 456 LRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLW---------DVHRGHSVRVFNGHTQ 506
Query: 96 EVTGVGYSNEQFAI-TVGSFGTVVKWDL 122
VT V + + + + S G + WD+
Sbjct: 507 PVTAVAIAPDGHTMASADSEGLIHLWDI 534
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 204 DKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFD 262
DK +RL+++ NE E S +E + AS KS + + + +++++D
Sbjct: 75 DKATKEIDRLYELENEGSSSSSESSEITDNEEV-ASASSKSTKSEELTDEESEDEEVYD 132
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 26.6 bits (56), Expect = 8.6
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 475 VGILDTSGRGARALVPGLAGGVYSLCWGLRSHLYACASGQLVVYDAARPDQ-RTTD 529
+G LD +G G + G A YSLC G R +VV + RPD R+TD
Sbjct: 181 LGALDFAGGGPVHISSGFAALAYSLCLGRR----------IVVDEPDRPDSIRSTD 226
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 230 PKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKIKPD 289
P+S +N E + P++SF+ S+ E ++ + D + +QP +K++
Sbjct: 258 PRSQKNSEKGSSI--YPQNSFNASIDNEGGPYEDFFKVVVDNVSSRDWQPVLANLKLELA 315
Query: 290 LKQEDYLAECLK 301
++D + +K
Sbjct: 316 KFRQDVIVRKIK 327
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.6 bits (56), Expect = 8.6
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 18/141 (12%)
Query: 204 DKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPED---SFDE---SVTVE 257
D VS KIRNE EP K +AS K+L +D +F++ V E
Sbjct: 560 DTNEQVSTAFEKIRNEEEPKLKGVLGMKFMR--DASNRQKALVQDEMQAFEDELAGVPNE 617
Query: 258 DDMFDIYKDHE-----ADEFGHKKYQPEEIRVKIKPDLKQEDYLAE--CLKLKEQILR-- 308
DD +D + G + ++P E K+ ++ ++++ LK+ + ++
Sbjct: 618 DDTSQKGEDGVPGVLIGNNTGRRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEG 677
Query: 309 -NKNETEESIESLVEALDKTH 328
K E + ES +EA ++T+
Sbjct: 678 QKKAEARKKKESPLEATEETN 698
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 8.6
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 193 EVVIKKLLKESDKRPSVSERLHKIRNEPEPD-EIEDS-NPKSSENLEASGMVKSLPEDSF 250
E +I + S++ + K+ ++P P ++D+ N + S+ L+A + KS F
Sbjct: 41 ESLIPPAQRSSEESMPAPKLFPKLTSKPNPQLNLKDTLNKRVSDRLQALELNKSF---DF 97
Query: 251 DESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKIKPDL 290
+ + H+ EF H+K E I P L
Sbjct: 98 SGTPRPMHPISHPLSQHKTPEFKHRKRNVESILTPKNPSL 137
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 187 SWCP-QYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIED-SNPKSSENLEASGMVKS 244
+WC + V++++LK S K S S+ +R+ ++ + K L+A+G+
Sbjct: 24 AWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQKIMRILKANGLAPE 83
Query: 245 LPEDSFD 251
LPED ++
Sbjct: 84 LPEDLYN 90
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 411 DNRTISVG-DGTVRIWETNT 429
D + +S G DGTVRIW NT
Sbjct: 439 DEKIVSGGYDGTVRIWNFNT 458
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 8.6
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 53 PEKRCILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVG 112
P +T + DG++K W +E K+ H +V + G+ + G
Sbjct: 174 PNDSKFVTASDDGSLKVWNFHMSTEELKLTG-HGWDVKTVDWHPSKGL--------LASG 224
Query: 113 SFGTVVK-WDLKSNVVKNYQHLLKSFKPVCMSCSSHLLLHVAVGTKQGVIFVLDLNGQGK 171
S +VK WD ++ H K+ + ++A ++ V DL K
Sbjct: 225 SKDNLVKFWDPRTGTCIATLHGHKNTIMQASFQKNFGSNYLATVSRDSTCRVFDLRAM-K 283
Query: 172 TIYKVRGQDDEIMTVSWCPQY 192
+ +RG + ++ V+W P Y
Sbjct: 284 DVRVLRGHEKDVNCVTWHPLY 304
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,733
Number of Sequences: 5004
Number of extensions: 109614
Number of successful extensions: 491
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 65
length of query: 532
length of database: 2,362,478
effective HSP length: 76
effective length of query: 456
effective length of database: 1,982,174
effective search space: 903871344
effective search space used: 903871344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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