Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001281-TA|BGIBMGA001281-PA|IPR011046|WD40-like,
IPR001680|WD-40 repeat
(532 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 44 3e-04
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 43 4e-04
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 36 0.051
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 36 0.067
At5g27330.1 68418.m03263 expressed protein 33 0.36
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.36
At3g56570.1 68416.m06290 SET domain-containing protein low simil... 33 0.47
At5g66540.1 68418.m08389 expressed protein ; supported by full-L... 33 0.62
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 33 0.62
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 33 0.62
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 32 0.83
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 32 1.1
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 32 1.1
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 32 1.1
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 31 1.4
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 31 1.4
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 1.9
At3g03770.1 68416.m00383 leucine-rich repeat transmembrane prote... 31 1.9
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 31 1.9
At2g26570.1 68415.m03187 expressed protein contains Pfam profile... 31 1.9
At2g22560.1 68415.m02674 kinase interacting protein-related simi... 31 1.9
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote... 31 1.9
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 31 1.9
At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE... 31 2.5
At3g15095.1 68416.m01909 expressed protein 31 2.5
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ... 31 2.5
At5g10240.1 68418.m01189 asparagine synthetase 3 (ASN3) identica... 30 3.3
At3g10880.1 68416.m01310 hypothetical protein 30 3.3
At2g23200.1 68415.m02771 protein kinase family protein contains ... 30 3.3
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 30 4.4
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 30 4.4
At5g45520.1 68418.m05591 hypothetical protein 30 4.4
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 30 4.4
At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc... 30 4.4
At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc... 30 4.4
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 30 4.4
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 30 4.4
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 29 5.8
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff... 29 5.8
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 29 5.8
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 29 5.8
At4g20060.1 68417.m02935 expressed protein ; expression support... 29 5.8
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 29 5.8
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 29 5.8
At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing... 29 5.8
At1g79570.1 68414.m09276 protein kinase family protein low simil... 29 5.8
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 29 7.7
At5g22620.1 68418.m02643 phosphoglycerate/bisphosphoglycerate mu... 29 7.7
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 29 7.7
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 29 7.7
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 29 7.7
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 7.7
At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containi... 29 7.7
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom... 29 7.7
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 29 7.7
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 7.7
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 44.0 bits (99), Expect = 3e-04
Identities = 49/238 (20%), Positives = 102/238 (42%), Gaps = 9/238 (3%)
Query: 58 ILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSFGTV 117
+L+G+ D + W ++ Q+ +N+ +E H + +V+ NE + G G +
Sbjct: 184 LLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSW-HMKNENLFGSAGEDGRL 242
Query: 118 VKWDLKSNVVKNYQHLLKSFKPVCMSCSSHLLLHVAVGTKQGVIFVLDLNGQGKTIYKVR 177
V WD ++N ++ +Q + + +S + +A + + + DL ++ +
Sbjct: 243 VIWDTRTNQMQ-HQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVMS 301
Query: 178 GQDDEIMTVSWCPQYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLE 237
+ E+ V W P +E V+ D+R V + L+++ E E+ D+ E L
Sbjct: 302 SHEGEVFQVEWDPNHETVLAS--SGEDRRLMVWD-LNRVGEEQLEIEL-DAEDGPPELLF 357
Query: 238 ASGMVKSLPEDSFDESVTVEDDMFDIYKDHEAD--EFGHKKYQPEEIRVKIKPDLKQE 293
+ G K+ D F + + + +D+ + Y+ EE IK D+ Q+
Sbjct: 358 SHGGHKAKISD-FAWNKNEPWVIASVAEDNSLQVWQMAESIYRDEEDAEDIKEDITQQ 414
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 43.2 bits (97), Expect = 4e-04
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 58 ILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSFGTV 117
+L+G+ D + W ++ A + +N H +E H + E+V NE + G +
Sbjct: 185 LLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAW-HMKNENIFGSAGDDCQL 243
Query: 118 VKWDLKSNVVKNYQHLLKSFKPVCMSCSSHLLLHVAVGTKQGVIFVLDLNGQGKTIYKVR 177
V WDL++N ++ +Q + + +S + +A + + + DL ++ +
Sbjct: 244 VIWDLRTNQMQ-HQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHVLS 302
Query: 178 GQDDEIMTVSWCPQYEVVI 196
+ E+ V W P +E V+
Sbjct: 303 KHEGEVFQVEWDPNHETVL 321
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 36.3 bits (80), Expect = 0.051
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 42 RIVSVDLSPEWPEKRCILTGAADGTVKQW-VITNIAQEFKINSTHSHEVHHNEKEEVTGV 100
R V+ D S EW TG+AD T+K W V T + K+ T E+V G+
Sbjct: 180 RSVAFDPSNEW-----FCTGSADRTIKIWDVATGV---LKLTLT-------GHIEQVRGL 224
Query: 101 GYSNEQ-FAITVGSFGTVVKWDLKSN-VVKNYQHLLKSFKPVCMSCSSHLLLHVAVGTKQ 158
SN + + G V WDL+ N V+++Y L + + + +LL G +
Sbjct: 225 AVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLL---TGGRD 281
Query: 159 GVIFVLDLNGQGKTIYKVRGQDDEIMTV 186
V V D+ + I+ + G D+ + +V
Sbjct: 282 SVCRVWDIRTK-MQIFALSGHDNTVCSV 308
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 35.9 bits (79), Expect = 0.067
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 48 LSPEWPEKRCILTGAADGT-----VKQ---WVITNIAQEFKINSTHSHEVHHNEKEEV-T 98
L + E R +L+GAADG+ VK+ + + + + K T + + K + +
Sbjct: 49 LQVDLTEGRYLLSGAADGSAAVFDVKRATDYEASGLIAKHKCIFTVRKQHENGHKYAISS 108
Query: 99 GVGYSNEQFAITVGSFGTVVK-WDLK-SNVVKNYQHLLKSFKPVCMSCS-SHLLLHVAVG 155
+ Y + GSF VK WD S VV +++ K ++ S + SH L +A G
Sbjct: 109 AIWYPIDTGMFITGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSHTL--IAAG 166
Query: 156 TKQGVIFVLDLNGQGKTIYKVRGQDDEIMTVSWCPQYEVVI 196
T + + D+ G + + G D +M+V W E V+
Sbjct: 167 TDDVQVRLCDI-ASGAFSHTLSGHRDGVMSVEWSTSSEWVL 206
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 33.5 bits (73), Expect = 0.36
Identities = 32/149 (21%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
Query: 191 QYEVVIKKLLKESDKRPSVSERLHKIRNE-PEPDEIEDSNPKSSENLEAS--GMVKSLPE 247
+ E V+K+ ++ R E + ++ + + +EI +S K E L G+ KSL E
Sbjct: 257 EIEGVVKEKMEVEMVRRDQREMIVELEKKLGDMNEIVESLTKEREGLRGQVVGLEKSLDE 316
Query: 248 DSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQIL 307
+ +E+ + + ++ K+ E + E +K + ++ + ++ KL EQ+L
Sbjct: 317 VT-EEAKARAEQINELVKEKTVKESELEGLMVENNSIKKEIEMAMVQF-SDKEKLVEQLL 374
Query: 308 RNKNE-TEESIESLVEALDKTHVSNDESH 335
R KNE + + E ++ + ++ ++ H
Sbjct: 375 REKNELVQRVVNQEAEIVELSKLAGEQKH 403
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.5 bits (73), Expect = 0.36
Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 223 DEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVED-DMFDIYKDHEADEFGHKKYQPEE 281
D I+DS ++ +++ ++ E+S D+ E D+ D ++EA+E+G ++++ E
Sbjct: 75 DSIDDSEAAANPHVDVPSKKETEVEESVDDFGKDERLDLDDNEPEYEAEEYGGEEFEERE 134
Query: 282 IRVKIKPDLKQE-DYLAECLKLKEQILRNKNETEESIESL-VEALDKTHVSNDESH 335
+ + + +E + L E ++++E+ +E + E L E D H + H
Sbjct: 135 LGQEDHELVNEEGEELEEEIEVEEEAGEFADEIGDGAEDLDSEDDDDDHAIEEVKH 190
>At3g56570.1 68416.m06290 SET domain-containing protein low
similarity to SP|Q43088 Ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (EC 2.1.1.127)
{Pisum sativum}; contains Pfam profile PF00856: SET
domain
Length = 531
Score = 33.1 bits (72), Expect = 0.47
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 214 HKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDE--SVTVEDDMFDIYKDHEADE 271
H+ +E + + +D+ ++++ E S + S PE SF+E +D+ + ++ E +E
Sbjct: 208 HESDSEADESDNDDAANETTDEDEPSSKISSSPEQSFEEVPGENTDDEAKEEEEEEEEEE 267
Query: 272 FGHKKYQPEE 281
G ++ + EE
Sbjct: 268 EGEEEEEGEE 277
>At5g66540.1 68418.m08389 expressed protein ; supported by
full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
Length = 524
Score = 32.7 bits (71), Expect = 0.62
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 247 EDSFDESVTVEDDMFDIYKDHEADEFGHKKYQ-----PEEIRVKIKPDLKQEDYLAECLK 301
ED DE VE D F D E D+ G +Y +E ++K+K DL ED AE
Sbjct: 216 EDDDDEEEDVEFDAFAGGDDEETDKLGKARYDDFFGGKKETKMKLK-DL-SEDEEAEIEN 273
Query: 302 LKEQILRNKNETEESIESLVEALDKTHV 329
+ L ++S +E ++K ++
Sbjct: 274 KGNEKLSTHERARLKLQSKIEQMEKANL 301
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 32.7 bits (71), Expect = 0.62
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 225 IEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRV 284
+ED+ + L+ S K + +DES + + DIY++ G E
Sbjct: 500 VEDAMKHLKQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGENSSLNERCST 559
Query: 285 KIKPDLKQEDYLAECLKLKEQILRNKNETEESIESLVEALDKTHVSNDES 334
+K +++ + E ++ +QI+ + +E + S +E L +T + E+
Sbjct: 560 LVKTVESKKEEIKEWIRNYDQIVLKQKAVQEQLSSEMEVL-RTRSTTSEA 608
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 32.7 bits (71), Expect = 0.62
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 53 PEKRCILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVG 112
P K + TG+ADG ++ W + Q ++S +H N V + E I+ G
Sbjct: 27 PSKSLLFTGSADGELRIW---DTIQHRAVSSAWAHS-RANGVLAVAASPWLGEDKIISQG 82
Query: 113 SFGTVVKWDLK 123
GTV WD++
Sbjct: 83 RDGTVKCWDIE 93
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 32.3 bits (70), Expect = 0.83
Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 48 LSPEWPEKRCILTGAADGT--------VKQWVITNIAQEFKINSTHSHEVHHNEKEEV-T 98
L + E R +L+GAADG+ + + + + K T + + K + +
Sbjct: 49 LQVDLTEGRYLLSGAADGSAAVFDVQRATDYEASGLIAKHKCIFTVDKQHENGHKYAISS 108
Query: 99 GVGYSNEQFAITVGSFGTVVK-WDLK-SNVVKNYQHLLKSFKPVCMSCS-SHLLLHVAVG 155
+ Y + GSF +K WD + V +++ K ++ S + SH L +A G
Sbjct: 109 AIWYPIDTGLFITGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTL--IAAG 166
Query: 156 TKQGVIFVLDLNGQGKTIYKVRGQDDEIMTVSWCPQYEVVI 196
T+ + + D+ G + + G D +M+V W E V+
Sbjct: 167 TEDVQVRLCDI-ASGAFSHTLSGHRDGVMSVEWSTSSEWVL 206
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 31.9 bits (69), Expect = 1.1
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 58 ILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSFGTV 117
+ TG+ DGT+K+W F ++T + + V + E ++ S TV
Sbjct: 55 LFTGSRDGTLKRWA-------FDEDATFCSATFESHVDWVNDAALAGESTLVSCSSDTTV 107
Query: 118 VKWDLKSNVVKNYQHLLKSFKPVCMSCSSHLLLHVAVGTKQGVIFVLDLNGQGKTIYKVR 177
WD S+ V S C++ ++ VA G G +F+ D+ + K
Sbjct: 108 KTWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNVVASGGLGGEVFIWDIEAALSPVTKPN 167
Query: 178 GQDDE 182
+++
Sbjct: 168 DANED 172
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 31.9 bits (69), Expect = 1.1
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 58 ILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSFGTV 117
+ TG+ DGT+K+W F ++T + + V + E ++ S TV
Sbjct: 55 LFTGSRDGTLKRWA-------FDEDATFCSATFESHVDWVNDAALAGESTLVSCSSDTTV 107
Query: 118 VKWDLKSNVVKNYQHLLKSFKPVCMSCSSHLLLHVAVGTKQGVIFVLDLNGQGKTIYKVR 177
WD S+ V S C++ ++ VA G G +F+ D+ + K
Sbjct: 108 KTWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNVVASGGLGGEVFIWDIEAALSPVTKPN 167
Query: 178 GQDDE 182
+++
Sbjct: 168 DANED 172
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 31.9 bits (69), Expect = 1.1
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 89 VHHNEKEEVTGVGYS--NEQFAITVGSFGTVVKWDLKS--NVVKNYQHLLKSFKPVCMSC 144
V+H ++ V V +S + Q +VG ++ WD ++ N V + + C+
Sbjct: 287 VYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLH-CVDW 345
Query: 145 SSHLLLHVAVGTKQGVIFVLD-----LNGQGKTIYKVRGQDDEIMTVSWCP 190
+ H + G+ + + D NG G IYK G ++ V W P
Sbjct: 346 NPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSP 396
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 214 HKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFG 273
HKI+ +D + ++L + EDS D + E D + Y+D + + G
Sbjct: 1096 HKIKGCGIRLSEDDESSDDDDDLSSETDYSDECEDSDDSDLGNEIDYSEDYEDRDTSDLG 1155
Query: 274 HKKYQPEEIRVKIKPDLKQE-DYLAEC 299
++ EE DL E DY EC
Sbjct: 1156 NETDYSEEYEDHDSSDLGNEYDYNEEC 1182
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 31.5 bits (68), Expect = 1.4
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 58 ILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSF-GT 116
+ +G+ADGTVK W Q+ K + ++ VT + S A+ GS G
Sbjct: 262 VFSGSADGTVKAW---KRDQQGKYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGSSDGL 318
Query: 117 VVKWDLKSNVVKNYQHLLKSFK--PVCMSCSSHLL 149
V W+ + + NY +LK K +C+ + L+
Sbjct: 319 VNFWEREKQL--NYGGILKGHKLAVLCLEVAGSLV 351
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 31.1 bits (67), Expect = 1.9
Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 191 QYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEI---EDSNPKSSENLEASGMVKSLPE 247
+ E +K L++ +K + ER + NE E+ ++ K E LE + L E
Sbjct: 761 ELEQRLKATLEQEEKERQIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKE 820
Query: 248 DSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKE-QI 306
E + + + + E ++ + ++ EI ++K DL+QE+ + KE +
Sbjct: 821 TR--EKEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRLQEAKERER 878
Query: 307 LRNKNETEESIE 318
L +N+ + E
Sbjct: 879 LHRENQEHQENE 890
>At3g03770.1 68416.m00383 leucine-rich repeat transmembrane protein
kinase, putative may contain C-terminal ser/thr protein
kinase domain, similar to serine/threonine protein
kinase Pto GB:AAB47421 [Lycopersicon esculentum]
Length = 802
Score = 31.1 bits (67), Expect = 1.9
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 193 EVVIKKLLKESDKRPSVSERLHKIRNEPEPDE--IEDSNPKSSENLEASGMVKSLPEDSF 250
E+ ++ LLK+ +RPS+ + L ++ + E +++SNP S+ S SLP S
Sbjct: 725 EICVRCLLKDPLERPSIEDVLWNLQFASQVQEGWLQNSNPSSNLG-SPSPAASSLPPPSR 783
Query: 251 DESVTVEDDMFDIYKDHE 268
T+E ++HE
Sbjct: 784 LHVTTLESPRDSGCEEHE 801
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 210 SERLHKIRNEPEPDE-IEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHE 268
SE+ H + DE +++S+ K + S KS+ ED + + D+ + D+
Sbjct: 316 SEKRHDRSKKVRRDEHVKESSRKKEDATSGSTEEKSMKEDHAGAAQLLGHDIVEKVSDYH 375
Query: 269 ADEFGHKKYQPEEIRVKIKPDLKQED 294
A E GH + ++K ++++
Sbjct: 376 ASEKGHDRSTKVRREERVKDSSRKKE 401
>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
weak similarity to merozoite surface protein 3 alpha
(GI:27596802) [Plasmodium vivax]
Length = 807
Score = 31.1 bits (67), Expect = 1.9
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 246 PEDSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKIK---PDLKQEDYLAECLKL 302
P +S E+V+ + D +K H +K EE++ KI P+ K AE KL
Sbjct: 170 PFESVKEAVSKFGGITD-WKSHRMQAVERRKLIEEELK-KIHEEIPEYKTHSETAEAAKL 227
Query: 303 KEQILRNKNETEESIESLVEALDKTHVSNDES 334
Q+L+ T+ IE L LDK ++
Sbjct: 228 --QVLKELESTKRLIEQLKLNLDKAQTEEQQA 257
>At2g22560.1 68415.m02674 kinase interacting protein-related similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]; weak similarity to Myosin II heavy chain,
non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
Length = 891
Score = 31.1 bits (67), Expect = 1.9
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 197 KKLLKESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSF-DESVT 255
++L+ E+ + S E+L +++ + E E++ + + E+ ++S+ DESV
Sbjct: 188 RRLMTETAIK-SCQEKLVELQEKQEKS-YEEAREEHVKIKESKEKLRSMASQFLGDESVF 245
Query: 256 VEDDMFDIYK----DHEADEFGHKKYQPEEIRVKIK 287
+DD ++ + DHE E KK + E ++ KI+
Sbjct: 246 AKDDGDEVRRTAELDHEIKEMSRKKKELESVKEKIR 281
>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
kinase, putative
Length = 744
Score = 31.1 bits (67), Expect = 1.9
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 262 DIYKDHEADEFG-HKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETEESIESL 320
D+ +D E DE K EIRV++ +ED CLKL + + + + S++ +
Sbjct: 679 DLVRDSETDEKSWFLKLVDGEIRVEVA---HREDEAVACLKLGYECVSSLPQKRPSMKEV 735
Query: 321 VEALDKTHV 329
V+ L+K V
Sbjct: 736 VQVLEKMFV 744
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 31.1 bits (67), Expect = 1.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 197 KKLLKESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLE 237
K+ +E+ R + ER H+ R +D NPK SE +E
Sbjct: 708 KRQSEENSDRETHKERRHRHRKRRRTQNSDDQNPKESEEVE 748
>At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE) /
sigma-like factor (SIG5) identical to RNA polymerase
sigma subunit SigE [Arabidopsis thaliana] GI:4972299,
sigma-like factor [Arabidopsis thaliana] GI:4033838;
contains Pfam profiles PF04545: Sigma-70, region 4,
PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
Length = 517
Score = 30.7 bits (66), Expect = 2.5
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 9/147 (6%)
Query: 180 DDEIMTVSWCPQYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIE-DSNPKSSENL-- 236
DD + P E V+ K ++K+ V+ R + +P +E +S P S +
Sbjct: 39 DDSSNSALIIPPREQVLIPAEKHNEKKREVTRR-KPCKTPKKPLSLEHNSAPSCSLGVDY 97
Query: 237 -EASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDY 295
EA+ ++S+ + S + VEDD+ D + +K EE +V ++ ++K+E
Sbjct: 98 NEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKE-- 155
Query: 296 LAECLKLKEQILRNKNETEESIESLVE 322
+ + L ++I +N E+ + + V+
Sbjct: 156 --KRMSLDKRIALKRNVQEKPVVASVD 180
>At3g15095.1 68416.m01909 expressed protein
Length = 684
Score = 30.7 bits (66), Expect = 2.5
Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 202 ESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMF 261
E KR + E+ E +E+ + ++ EA + S P +E V V +D
Sbjct: 351 EDKKRIDLCEKWISGETTVETEEVSVAVAEAEAEAEAEAPLPSNPATEEEERVKVVEDSI 410
Query: 262 DIYKDHEA----DEFGHKKYQP--EEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETEE 315
+ ++ EA D F + ++I +I+ +++E+ LAE +L + E EE
Sbjct: 411 -VEEEQEASKILDSFEEEIEATIMKKIEDEIRNAIEEEEKLAEMEELAVVAVAETEEVEE 469
Query: 316 SIESLVEALDKTHVSNDESH 335
S E + + + + +++ +
Sbjct: 470 SKEVVPDCIPQNEERSEQGN 489
>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
NAD(+) ADP-ribosyltransferase, putative /
poly[ADP-ribose] synthetase, putative similar to
poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
contains Pfam profiles PF00644: Poly(ADP-ribose)
polymerase catalytic domain, PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region, PF02877:
Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
BRCA1 C Terminus (BRCT) domain
Length = 983
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 285 KIKPDLKQEDYLAECLKLKEQILRNKNETEESIESLV 321
++K + +EDYL +C K + ++ +K + E++ ESLV
Sbjct: 456 RMKVAIVREDYLVDCFKKQRKLPFDKYKIEDTSESLV 492
>At5g10240.1 68418.m01189 asparagine synthetase 3 (ASN3) identical
to asparagine synthetase (ASN3) [Arabidopsis thaliana]
GI:3859534
Length = 578
Score = 30.3 bits (65), Expect = 3.3
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 44 VSVDLSPEWPEKRCILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYS 103
V++ + PEW R L G +++WV+ N + K H ++ +++ GVGYS
Sbjct: 406 VAMSIDPEWKMIRPDL-----GRIEKWVLRNAFDDEKNPYLPKHILYRQKEQFSDGVGYS 460
>At3g10880.1 68416.m01310 hypothetical protein
Length = 278
Score = 30.3 bits (65), Expect = 3.3
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 18/128 (14%)
Query: 204 DKRPSVSERLHKIRN-EPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFD 262
D +S+ ++KI E E DE+++ S E S +++ L E ++S D+ D
Sbjct: 132 DLESKLSDSVYKIEKLESELDEVKECLGVSEA--EVSKLMEMLSECKNEKSKLQTDNADD 189
Query: 263 IYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETE----ESIE 318
+ A+ + EI+++ + E+YL + L L E +++++ET+ E +
Sbjct: 190 LLDSLRAE------LRSREIQIE-----QMEEYLNQVLCLNETEIKSESETDKNIVEELR 238
Query: 319 SLVEALDK 326
+ VE L+K
Sbjct: 239 AKVEVLEK 246
>At2g23200.1 68415.m02771 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 834
Score = 30.3 bits (65), Expect = 3.3
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 71 VITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSFGTVVKWDLKSNVVKNY 130
++ N+ FK+ S H H + + + ++ + S+ F + V + V D+K + +
Sbjct: 286 MLMNVTWSFKVKSNHRHFIRIHFSDILSNLSNSDSDFYLFVNGYWRV---DVKPS--EQP 340
Query: 131 QHLLKSFKPVCMSCSSHLLLHVAVGTKQ 158
+ FK V LL++++GTK+
Sbjct: 341 RLASPFFKDVVNVSDGSGLLNISIGTKE 368
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 29.9 bits (64), Expect = 4.4
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 218 NEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHKKY 277
NE + D+ + N KS+ N K ++ D+ +D KD E E K+
Sbjct: 39 NEVQVDKGKGDNGKSNGNGP-----KDKEQEKKDKEKAAKDKKEKEKKDKEEKEKKDKER 93
Query: 278 QPEEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETEES 316
+ +E + K++ + K ++ + K KE+ + K + EES
Sbjct: 94 KEKEKKDKLEKEKKDKERKEKERKEKERKAKEKKDKEES 132
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 29.9 bits (64), Expect = 4.4
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 193 EVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDE 252
EV ++ +KE+D + K + E + E+ K ++ + G+ + + S +
Sbjct: 103 EVTEEEKVKETDAVIEDGVKEKKKKKETKVKVTEEEKVKETDAVIEDGVKEKKKKKSKSK 162
Query: 253 SVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQILRNKNE 312
SV +DD + K + E K + E+ + K K+E+ + ++E ++ + E
Sbjct: 163 SVEADDDKEKVSKKRKRSEPEETKEETEDDDEESKRRKKEENVVENDEGVQETPVK-ETE 221
Query: 313 TEES 316
T+E+
Sbjct: 222 TKEN 225
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 29.9 bits (64), Expect = 4.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 223 DEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEE 281
DE+E +S + +E G +S P++S D + DD + K+ + D+ K PEE
Sbjct: 738 DEVEAKKSESGKVVEGDGK-ESPPQESIDTIQNMTDDQTKVEKEGDRDK---GKVDPEE 792
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 29.9 bits (64), Expect = 4.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 31 VKVVILNVTVQRIVSVDLSPEWPEKRCILTGAADGTVKQWVITN 74
V VV L +RI SV+ S +C++T + D TVK W I++
Sbjct: 532 VHVVTLKGHKRRIFSVEFSTV---DQCVMTASGDKTVKIWAISD 572
>At4g39040.2 68417.m05530 expressed protein contains PF01985:
Uncharacterised protein family
Length = 280
Score = 29.9 bits (64), Expect = 4.4
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 218 NEPEPDEIEDSNPK--SSENLEASGMVKSLPEDSFDESVTV-EDDMFDIYKDHEADEFGH 274
+EP+ +E E+S + S+E E + ED D V V E + D E E G
Sbjct: 77 DEPDLEEDEESEDEDFSAEEYEYEDEEE---EDEQDSGVVVSERGIEDSEASEEVSEIGD 133
Query: 275 KKYQPEEIRVK------IKPDLKQEDYLAECL-----KLKEQILRNKNETEESIESLVEA 323
K+ + E + K +K +K++ LA KLK Q++ T+ + S +E
Sbjct: 134 KEEKTENTKKKKSRGSALKLSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLET 193
Query: 324 LDKTHV 329
L+K +
Sbjct: 194 LEKNEL 199
>At4g39040.1 68417.m05529 expressed protein contains PF01985:
Uncharacterised protein family
Length = 296
Score = 29.9 bits (64), Expect = 4.4
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 218 NEPEPDEIEDSNPK--SSENLEASGMVKSLPEDSFDESVTV-EDDMFDIYKDHEADEFGH 274
+EP+ +E E+S + S+E E + ED D V V E + D E E G
Sbjct: 77 DEPDLEEDEESEDEDFSAEEYEYEDEEE---EDEQDSGVVVSERGIEDSEASEEVSEIGD 133
Query: 275 KKYQPEEIRVK------IKPDLKQEDYLAECL-----KLKEQILRNKNETEESIESLVEA 323
K+ + E + K +K +K++ LA KLK Q++ T+ + S +E
Sbjct: 134 KEEKTENTKKKKSRGSALKLSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLET 193
Query: 324 LDKTHV 329
L+K +
Sbjct: 194 LEKNEL 199
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 29.9 bits (64), Expect = 4.4
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 58 ILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSF-GT 116
+ TG+ADGTVK W + A++ K E + VT + + GS GT
Sbjct: 267 VFTGSADGTVKVWRREDQAKDTK---HFFSETLLKQDCAVTAIAVDQSATLVYCGSSDGT 323
Query: 117 VVKWDLKSNVVKNYQHLLKSFK--PVCMSCSSHLL 149
V W+ ++N +KN +LK K +C+ + +L+
Sbjct: 324 VNFWERENN-MKN-GGVLKGHKLAVLCLVAAGNLM 356
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 29.9 bits (64), Expect = 4.4
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 53 PEKRCILTGAADGTVKQWVITNIAQEFKIN--STHSHEVHHNEKEEVTGVGYSNEQFAIT 110
PE I+TG+ DGTV+ W T E +N + H + +GY +
Sbjct: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGHIKGSRRVVIGYDEGSIMVK 298
Query: 111 VGSFGTVVKWDLKSNVV 127
+G V D ++
Sbjct: 299 LGREIPVASMDNSGKII 315
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/77 (18%), Positives = 41/77 (53%)
Query: 219 EPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHKKYQ 278
E + D + D + K+ +NL SG+++ + + +++D+ + ++ E +E + +
Sbjct: 47 EKKSDVVVDVDEKNEKNLNESGVIEDCVMNGVSSLLKLKEDVEEEEEEEEEEEEEEEDGE 106
Query: 279 PEEIRVKIKPDLKQEDY 295
EE + + + ++E++
Sbjct: 107 DEEEEEEEEEEEEEEEH 123
>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1311
Score = 29.5 bits (63), Expect = 5.8
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 132 HLLKSFKPVCMSCSSHLLLHVAVGTKQGV--------IFVLDLNGQGKTIYKVRGQDDEI 183
HL +SF ++ +H A GT GV V G GKT + V G + I
Sbjct: 625 HLHRSFNAPQLAAIHWAAMHTAAGTSSGVKRQDPWPFTLVQGPPGTGKT-HTVWGMLNVI 683
Query: 184 MTVSWCPQYEVVIKKLLKESDKRPSVS 210
V + Y ++KKL ES K+ + S
Sbjct: 684 HLVQYQQYYTSLLKKLAPESYKQVNES 710
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.5 bits (63), Expect = 5.8
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 89 VHHNEKEEVTGVGY--SNEQFAITVGSFGTVVKWDLKSNVVKNYQ-HLLKSFKPVCMSCS 145
+++ K+ V V + S+ Q +VG ++ WD ++ + C+ +
Sbjct: 276 IYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWN 335
Query: 146 SHLLLHVAVGTKQGVIFVLDL-----NGQGKTIYKVRGQDDEIMTVSWCP 190
H + G+ + V D NG G +YK G ++ V W P
Sbjct: 336 PHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWSP 385
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 29.5 bits (63), Expect = 5.8
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 190 PQYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIEDSNPK-------SSENLEASGMV 242
P + +I S PS +E + K + +P+P E S PK ++E + + V
Sbjct: 383 PDEKPLIAPEAAPSKATPSETEVVPKAKAKPQPKEEPVSAPKPDATVAQNTEKAKDAVKV 442
Query: 243 KSLPEDSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKL 302
K++ +D DE + ++ D K+ + +E K K ++++ LAE
Sbjct: 443 KNVADDDDDEVYGLGKPQ---KEEKPVDAATAKEMRKQEEIAKAKQAMERKKKLAEKAAA 499
Query: 303 KEQILRNKN-ETEESIESLVEALDKT 327
K I K E +E E +A KT
Sbjct: 500 KAAIRAQKEAEKKEKKEQEKKAKKKT 525
>At4g20060.1 68417.m02935 expressed protein ; expression supported
by MPSS
Length = 1134
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 296 LAECLKLKEQILRNKNETEESIESLVEALDK 326
L ECL L Q LRNKN+ EE + + ++L +
Sbjct: 738 LVECLGLLNQDLRNKNQVEEILLTGCDSLQQ 768
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 29.5 bits (63), Expect = 5.8
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Query: 42 RIVSVDLSPEWPEKRCILTGAADGTVKQW-VITNIAQEFKINSTHSHEVHHNEKEEVTGV 100
R V+ D S EW TG+AD T+K W V T + K+ T +V G+
Sbjct: 174 RSVAFDPSNEW-----FCTGSADRTIKIWDVATGV---LKLTLT-------GHIGQVRGL 218
Query: 101 GYSNEQ-FAITVGSFGTVVKWDLKSN-VVKNYQ-HL 133
SN + + G V WDL+ N V+++Y HL
Sbjct: 219 AVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHL 254
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 29.5 bits (63), Expect = 5.8
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 196 IKKLLKESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVT 255
+K K + + E ++ NE + D+++ N + E+ G V S ED +E+
Sbjct: 986 VKSTSKPENSAEAEVEADAEVENEDDADDVDSENASEASGTESGGDVCSQDEDREEEN-- 1043
Query: 256 VEDDMFDIYKDHEADEFG 273
E D D + E + G
Sbjct: 1044 GEHDEIDGKAESEGEAEG 1061
>At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing
protein low similarity to NUC-2 [Neurospora crassa]
GI:1399532, xenotropic and polytropic murine leukemia
virus receptor [Mus musculus castaneus] GI:6093320;
contains Pfam profile PF03105: SPX domain
Length = 287
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 291 KQEDYLAECLKLKEQILRNKNETEESIESLVEALD 325
++E+Y+ +LK+Q+ + KN EE I E +D
Sbjct: 88 QEEEYIIRLKELKDQVAKAKNSNEEMINIKKEIVD 122
>At1g79570.1 68414.m09276 protein kinase family protein low
similarity to EDR1 [Arabidopsis thaliana] GI:11127925
Length = 1248
Score = 29.5 bits (63), Expect = 5.8
Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Query: 201 KESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDM 260
++S +R SER+ + + E + N SS+ + + + +DS E+V D
Sbjct: 629 EQSSQRVYCSERIPREQLELLNRLSKSDNSLSSQFVTSESPANTAQQDSGKEAVGKSHDE 688
Query: 261 FDIYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETEESIESL 320
F D +A+ HK + +V + + + + L + + + NKN ++
Sbjct: 689 FKTVND-DANHHTHKDVETIFEKVGVSDETLESEPLHKIVNPDD---ANKNRVVNGADTE 744
Query: 321 VEALDKTHVSNDESH 335
+ + +HV+ SH
Sbjct: 745 IGVSNLSHVNAAMSH 759
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 29.1 bits (62), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 402 YKSNMLLIGDNRTISVGDGTVRIWETNTLD 431
Y S++ L G DG VR+W NTL+
Sbjct: 40 YISSLTLAGKRLYTGSNDGVVRLWNANTLE 69
>At5g22620.1 68418.m02643 phosphoglycerate/bisphosphoglycerate
mutase family protein weak similarity to SP|P15259
Phosphoglycerate mutase, muscle form (EC 5.4.2.1 {Homo
sapiens}; contains Pfam profile PF00300:
phosphoglycerate mutase family
Length = 482
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 270 DEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQIL 307
DE +K P EI V + P + +A+CL L ++ L
Sbjct: 400 DELSDEKSNPGEIMVVVGPAMTHISLIAQCLNLTKEAL 437
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 29.1 bits (62), Expect = 7.7
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 53 PEKRCILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVG 112
PE I+TG+ DGTV+ W T +++ +T ++ + E V +GY + +G
Sbjct: 239 PELPIIITGSEDGTVRIWHATT----YRLENTLNYGL-----ERVWAIGYIKSSRRVVIG 289
Query: 113 -SFGTVV 118
GT++
Sbjct: 290 YDEGTIM 296
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 29.1 bits (62), Expect = 7.7
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 53 PEKRCILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVG 112
PE I+TG+ DGTV+ W T +++ +T ++ + E V +GY + +G
Sbjct: 239 PELPIIITGSEDGTVRIWHATT----YRLENTLNYGL-----ERVWAIGYIKSSRRVVIG 289
Query: 113 -SFGTVV 118
GT++
Sbjct: 290 YDEGTIM 296
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 29.1 bits (62), Expect = 7.7
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 53 PEKRCILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVG 112
PE I+TG+ DGTV+ W T +++ +T ++ + E V +GY + +G
Sbjct: 239 PELPIIITGSEDGTVRIWHATT----YRLENTLNYGL-----ERVWAIGYIKSSRRVVIG 289
Query: 113 -SFGTVV 118
GT++
Sbjct: 290 YDEGTIM 296
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.1 bits (62), Expect = 7.7
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 216 IRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHK 275
+R+ PD IED + S ++ + + +DS D+ + V D + + + A F
Sbjct: 982 MRSSTLPDIIEDLDMLSPGGFDSVEVTSVMSQDSHDKGIRVAVDGYFTFNERPARNFTQN 1041
Query: 276 -KYQPEEIRVKIKPDL 290
+ P+E + + D+
Sbjct: 1042 FTFAPQEKGLFVSTDM 1057
>At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 643
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 170 GKTIYK-VRGQDDEIMTVSWCPQYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIEDS 228
GKT+YK G+ + + + + + +I +L E+ P V+ L+ + E + D++
Sbjct: 516 GKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKH 575
Query: 229 NPK 231
+ K
Sbjct: 576 SEK 578
>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
domain-containing protein similar to nuclear protein
5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
PF02373: jmjC domain
Length = 883
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 214 HKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYK 265
HK++N+ + ED N K E E M PE S +E+ ++DI++
Sbjct: 709 HKLQNKVDKQSTEDCNEKEEEEEEELNM----PEISSNENEETGSALWDIFR 756
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 29.1 bits (62), Expect = 7.7
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 53 PEKRCILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVG 112
PE I+TG+ DGTV+ W T +++ +T ++ + E V +GY + +G
Sbjct: 239 PELPIIITGSEDGTVRIWHATT----YRLENTLNYGL-----ERVWAIGYIKSSRRVVIG 289
Query: 113 -SFGTVV 118
GT++
Sbjct: 290 YDEGTIM 296
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 223 DEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKD 266
D + +N + SE+ E SG+V+ LP + E V+ +D I D
Sbjct: 463 DGLSCTNQQGSESDEISGLVEKLPSHALHEVVSSANDTSVIVSD 506
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.133 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,109,335
Number of Sequences: 28952
Number of extensions: 578963
Number of successful extensions: 2375
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2335
Number of HSP's gapped (non-prelim): 87
length of query: 532
length of database: 12,070,560
effective HSP length: 84
effective length of query: 448
effective length of database: 9,638,592
effective search space: 4318089216
effective search space used: 4318089216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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