Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001280-TA|BGIBMGA001280-PA|IPR001441|Di-trans-poly-cis-
decaprenylcistransferase
         (145 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31433| Best HMM Match : Prenyltransf (HMM E-Value=0.25)             40   8e-04
SB_11509| Best HMM Match : Ycf9 (HMM E-Value=1.4)                      34   0.053
SB_16409| Best HMM Match : DUF948 (HMM E-Value=0.57)                   27   6.1  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  

>SB_31433| Best HMM Match : Prenyltransf (HMM E-Value=0.25)
          Length = 214

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 9   RLCLNIAYAYTGRDEISRAASRIIDGVKENKISPENIDEELISQSL----DLGEPELLVR 64
           ++C+ +  A  G+ +I  AA      VK+ + SP+ +D +L +  L     L +P+L ++
Sbjct: 62  QVCITVLSAEDGKQDIVEAAQEFCMSVKQKEYSPKQLDTDLFNDMLKATTGLPDPDLALK 121

Query: 65  TSGEVRLSDFMLWQISNT 82
                 +  F+ WQI  T
Sbjct: 122 FGAVSSVMGFLPWQIRLT 139


>SB_11509| Best HMM Match : Ycf9 (HMM E-Value=1.4)
          Length = 308

 Score = 33.9 bits (74), Expect = 0.053
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 9   RLCLNIAYAYTGRDEISRAASRIIDGVKENKISPENIDEELISQSL 54
           ++C+ +  A  G+ +I  AA      VK+ K SP+ +D +L +  L
Sbjct: 218 QVCITVLSAEDGKQDIVEAAQEFCMSVKQKKYSPKQLDTDLFNDML 263


>SB_16409| Best HMM Match : DUF948 (HMM E-Value=0.57)
          Length = 495

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 111 PPIKAEDTNETAHEKKEFLKYLEQRRAQEL 140
           PP+ A + +E  ++  E  ++LE+ R QEL
Sbjct: 19  PPLGAANPSENGYKSSEDERHLEKARVQEL 48


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 16  YAYTGRDEISRAASRIIDGVKENKISPENIDEE 48
           Y     +++ +  SR    VKE + +PE IDEE
Sbjct: 175 YKVVATNDVGKVTSRADLRVKERQFAPEFIDEE 207


>SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 22  DEISRAASRIIDGVKENKISPENIDEELISQSLDLGEPELLVRTSGEVRLSDFML 76
           +E++   S + +  K+N +  ++ID+ L    L L + E + R S +V+ + F+L
Sbjct: 502 EEVNHLKSELYEAHKDNDVLKDDIDDAL--HRLKLKDTE-IARLSAQVKTAMFLL 553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,593,543
Number of Sequences: 59808
Number of extensions: 165297
Number of successful extensions: 479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 5
length of query: 145
length of database: 16,821,457
effective HSP length: 76
effective length of query: 69
effective length of database: 12,276,049
effective search space: 847047381
effective search space used: 847047381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)