Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001280-TA|BGIBMGA001280-PA|IPR001441|Di-trans-poly-cis-
decaprenylcistransferase
(145 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908 87 4e-18
07_03_1213 + 24921603-24921746,24921923-24922786 66 8e-12
06_01_0477 + 3404648-3404657,3405385-3405461,3405638-3406501 66 1e-11
05_01_0603 - 5399295-5399748,5403745-5403909,5404007-5404069,540... 30 0.64
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310... 29 1.9
02_05_0831 - 32071280-32071403,32071528-32071706,32071786-320718... 27 7.8
01_06_1757 - 39678181-39678325,39678472-39678626,39678731-396788... 27 7.8
>01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908
Length = 295
Score = 87.4 bits (207), Expect = 4e-18
Identities = 43/111 (38%), Positives = 72/111 (64%), Gaps = 7/111 (6%)
Query: 4 TKDNNRLCLNIAYAYTGRDEISRAASRIIDGVKENKISPENIDEELISQSLDLG------ 57
T++N++L L +A +Y+GR +I +A ++ V+ ++ E+IDE L + L+
Sbjct: 174 TRNNSQLDLTLAISYSGRRDIVQACRKLAQKVQSKALAAEDIDEALFADELETSCAADEF 233
Query: 58 -EPELLVRTSGEVRLSDFMLWQISNTVLYFTDVLWPEFTIWNLLAAIIHFQ 107
P+LL+RTSGE+RLS+F+LWQ + + L+FT+ LWP+F + L A+ FQ
Sbjct: 234 PYPDLLIRTSGELRLSNFLLWQSAYSELFFTNTLWPDFGEADYLEALCSFQ 284
>07_03_1213 + 24921603-24921746,24921923-24922786
Length = 335
Score = 66.5 bits (155), Expect = 8e-12
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 18/130 (13%)
Query: 1 MLATKDNNRLCLNIAYAYTGRDEISRAASRI------------IDGVKEN----KISPEN 44
M++T +N L ++ Y EI A +++ +D V N IS +
Sbjct: 198 MVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAERRDILQREDVDSVANNGVHSDISVAD 257
Query: 45 IDEELISQSLDLGEPELLVRTSGEVRLSDFMLWQISNTVLYFTDVLWPEFTIWNLLAAII 104
+D + S +P++++RTSGE RLS+F+LWQ + + L D LWPEF+ +L+ AI+
Sbjct: 258 LDHHMYSAGCP--DPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAIL 315
Query: 105 HFQRNAPPIK 114
+QR P I+
Sbjct: 316 QYQRVHPYIE 325
>06_01_0477 + 3404648-3404657,3405385-3405461,3405638-3406501
Length = 316
Score = 65.7 bits (153), Expect = 1e-11
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 1 MLATKDNNRLCLNIAYAYTGRDEISRAASRII------------DGVKEN----KISPEN 44
M T +N L ++ Y EI A +++ D V N IS +
Sbjct: 179 MATTAENTGLVFSVCMPYNSTSEIVNAVNKVCAERRDILQREDADSVANNGVYSDISVAD 238
Query: 45 IDEELISQSLDLGEPELLVRTSGEVRLSDFMLWQISNTVLYFTDVLWPEFTIWNLLAAII 104
+D + S +P++++RTSGE RLS+F+LWQ + + L D LWPEF+ +L+ AI+
Sbjct: 239 LDRHMYSAGCP--DPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAIL 296
Query: 105 HFQRNAPPIK 114
+QR P I+
Sbjct: 297 QYQRVHPSIE 306
>05_01_0603 -
5399295-5399748,5403745-5403909,5404007-5404069,
5404320-5404720,5404861-5404930,5405151-5405266
Length = 422
Score = 30.3 bits (65), Expect = 0.64
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 87 TDVLWPEFTIWNLLAAIIHFQ--------RNAPPIKAEDTNETAHEKKEFLKYLEQRRAQ 138
T+ W E T N + ++H+ R ++ ED ++ + FL+Y+EQ A
Sbjct: 232 TEARWLELTANNCASGLLHYDSKARLRWCRGVAKVREEDPGAQPYDNRSFLQYVEQGTAP 291
Query: 139 EL 140
L
Sbjct: 292 AL 293
>04_03_0813 -
19929562-19929798,19930209-19930580,19930686-19931039,
19931120-19931188,19931294-19931479,19932762-19932989,
19933655-19934020,19934154-19934354,19934923-19935093,
19935178-19935285,19935423-19935635,19936093-19936299,
19936485-19936586,19936714-19936902,19937766-19937933
Length = 1056
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 105 HFQRNAPPIKAEDTNETAHEKKEFLKYLEQ-RRAQELTKYI 144
H ++ PPI D + KEFL L++ RR + +Y+
Sbjct: 560 HSKKECPPIHMTDLTRVPKKAKEFLHLLQRSRRHSAIVEYV 600
>02_05_0831 -
32071280-32071403,32071528-32071706,32071786-32071893,
32071987-32072109,32072480-32072608,32072998-32073281,
32073783-32074094,32074208-32074340
Length = 463
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 MLATKDNNRLCLNIAYAYTGRDEISRAASRIIDGVKENKISPENI 45
+L T D+NR+ + Y Y+ R + A+ +++ ++E K++P ++
Sbjct: 230 VLLTPDDNRVVASQVYGYSRRFAETGIAAVLVNALRE-KVAPSSL 273
>01_06_1757 -
39678181-39678325,39678472-39678626,39678731-39678898,
39679532-39679723,39679821-39680000,39680099-39680266
Length = 335
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 114 KAEDTNETA-HEKKEFLKYLEQRRAQE 139
+ E+ ETA E +EF +Y+ QR QE
Sbjct: 233 RPEELKETAGDESREFTRYMRQRELQE 259
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,969,557
Number of Sequences: 37544
Number of extensions: 144393
Number of successful extensions: 439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 7
length of query: 145
length of database: 14,793,348
effective HSP length: 76
effective length of query: 69
effective length of database: 11,940,004
effective search space: 823860276
effective search space used: 823860276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -