GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001280-TA|BGIBMGA001280-PA|IPR001441|Di-trans-poly-cis-
decaprenylcistransferase
         (145 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069247-1|AAL39392.1|  300|Drosophila melanogaster GM02310p pro...   113   1e-25
AE014298-1088|AAF46296.2|  300|Drosophila melanogaster CG10778-P...   113   1e-25
AY095030-1|AAM11358.1|  167|Drosophila melanogaster LD18018p pro...    27   7.6  
AE014296-3078|AAF49214.2|  167|Drosophila melanogaster CG3893-PA...    27   7.6  

>AY069247-1|AAL39392.1|  300|Drosophila melanogaster GM02310p
           protein.
          Length = 300

 Score =  113 bits (271), Expect = 1e-25
 Identities = 53/112 (47%), Positives = 82/112 (73%), Gaps = 4/112 (3%)

Query: 1   MLATKDNNRLCLNIAYAYTGRDEISRAASRIIDGVKENKISPENIDEELISQSLDLGE-- 58
           ML+T+ N++L LN+A+AYT RDEI++A   I+    ++ ++ E+I E L+ + L      
Sbjct: 140 MLSTERNDKLFLNVAFAYTSRDEITQAVETILRHGSQD-LAGEDISERLLEECLYTRHSP 198

Query: 59  -PELLVRTSGEVRLSDFMLWQISNTVLYFTDVLWPEFTIWNLLAAIIHFQRN 109
            P+L+ RTSGE RLSDFM+WQ+S +VLYF++VLWP+ T W+ LA+I+ +QR+
Sbjct: 199 PPDLVFRTSGETRLSDFMMWQLSTSVLYFSNVLWPQITFWHFLASILAYQRD 250


>AE014298-1088|AAF46296.2|  300|Drosophila melanogaster CG10778-PA
           protein.
          Length = 300

 Score =  113 bits (271), Expect = 1e-25
 Identities = 53/112 (47%), Positives = 82/112 (73%), Gaps = 4/112 (3%)

Query: 1   MLATKDNNRLCLNIAYAYTGRDEISRAASRIIDGVKENKISPENIDEELISQSLDLGE-- 58
           ML+T+ N++L LN+A+AYT RDEI++A   I+    ++ ++ E+I E L+ + L      
Sbjct: 140 MLSTERNDKLFLNVAFAYTSRDEITQAVETILRHGSQD-LAGEDISERLLEECLYTRHSP 198

Query: 59  -PELLVRTSGEVRLSDFMLWQISNTVLYFTDVLWPEFTIWNLLAAIIHFQRN 109
            P+L+ RTSGE RLSDFM+WQ+S +VLYF++VLWP+ T W+ LA+I+ +QR+
Sbjct: 199 PPDLVFRTSGETRLSDFMMWQLSTSVLYFSNVLWPQITFWHFLASILAYQRD 250


>AY095030-1|AAM11358.1|  167|Drosophila melanogaster LD18018p
           protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 103 IIHFQRNAPPIKAEDTNETAHEKKE 127
           I+H+Q +AP + +EDT     E +E
Sbjct: 63  IVHYQTSAPAVLSEDTRHAKIESEE 87


>AE014296-3078|AAF49214.2|  167|Drosophila melanogaster CG3893-PA
           protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 103 IIHFQRNAPPIKAEDTNETAHEKKE 127
           I+H+Q +AP + +EDT     E +E
Sbjct: 63  IVHYQTSAPAVLSEDTRHAKIESEE 87


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,795,209
Number of Sequences: 52641
Number of extensions: 254708
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 869
Number of HSP's gapped (non-prelim): 4
length of query: 145
length of database: 24,830,863
effective HSP length: 78
effective length of query: 67
effective length of database: 20,724,865
effective search space: 1388565955
effective search space used: 1388565955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)