Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001279-TA|BGIBMGA001279-PA|IPR001441|Di-trans-poly-cis-
decaprenylcistransferase
         (109 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34705| Best HMM Match : Prenyltransf (HMM E-Value=3.5)              46   5e-06
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  31   0.27 
SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)       27   4.4  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)                 26   5.8  
SB_10645| Best HMM Match : CXCXC (HMM E-Value=4.4)                     26   5.8  
SB_2320| Best HMM Match : TFIID_20kDa (HMM E-Value=2.2)                26   5.8  
SB_9834| Best HMM Match : CXCXC (HMM E-Value=4.4)                      26   5.8  
SB_2763| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.46)           26   7.7  

>SB_34705| Best HMM Match : Prenyltransf (HMM E-Value=3.5)
          Length = 122

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 18/31 (58%), Positives = 26/31 (83%)

Query: 34 MDGNRRYAKKNSVDKSTGHHKGFDKLSETLK 64
          MDGNRR+AKK + ++S GH KGF+KL+E ++
Sbjct: 1  MDGNRRFAKKVNCERSKGHEKGFEKLTEKIR 31


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 57  DKLSETLKWCLDLGIPEVTVY-AFSIENFKRSKEEVDALMELAREKFQ 103
           D +S  ++WC +L +P+V ++    +   K  K  +  L+E+AR+ F+
Sbjct: 108 DNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLEVARKAFK 155


>SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)
          Length = 386

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 46  VDKSTGHH--KGF---DKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALME 96
           VD++  HH  KG+   D   +  ++C  L   E+   A +++  ++ +EE+D L E
Sbjct: 308 VDQAYSHHYVKGYLLRDLRGKDREFCRSLVRNELNYLAHNLQRHRKQQEEIDDLGE 363


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 47  DKSTGHHKGFDKLSETLKWCLDLGIPEV--------TVYAFSIENFKRSKEEVDALMELA 98
           DK+T   KGF K   T++  + +GIP++        TV  F    F  ++ + +ALME  
Sbjct: 263 DKNTDITKGFVKDDVTVQKDVVIGIPDLSDTRVVMRTVRIFLSSTFTDTRLDRNALMEQV 322

Query: 99  REKFQNLLDE 108
            E   +L  E
Sbjct: 323 FEPLTHLCQE 332


>SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)
          Length = 567

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 43  KNSVDKSTGHHKGFDKLSETLKW----CLDLGIPEVTVYAFSIENFKRSKE 89
           + +++   G H+ F    E LK+    C DLG+ +V  YA  ++  ++++E
Sbjct: 373 QQALETYKGIHQKFPDNVECLKFLVRICTDLGLKDVQEYAQKLKKAEKARE 423


>SB_10645| Best HMM Match : CXCXC (HMM E-Value=4.4)
          Length = 108

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 38 RRYAKKNSVDKSTGH--HKGFDKLSE 61
          RRY  + S+D+ TGH    G DKL E
Sbjct: 11 RRYVSRLSLDRPTGHGLSTGEDKLQE 36


>SB_2320| Best HMM Match : TFIID_20kDa (HMM E-Value=2.2)
          Length = 161

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 85  KRSKEEVDALMELAREKFQNLLDE 108
           K+SK EV  L E  +E+FQ++ D+
Sbjct: 71  KKSKAEVRVLYERIKERFQDIQDK 94


>SB_9834| Best HMM Match : CXCXC (HMM E-Value=4.4)
          Length = 247

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 38  RRYAKKNSVDKSTGH--HKGFDKLSE 61
           RRY  + S+D+ TGH    G DKL E
Sbjct: 150 RRYVSRLSLDRPTGHGLSTGEDKLQE 175


>SB_2763| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.46)
          Length = 336

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 51 GHHKGFDKLSETLKWCLDLGIPEV 74
          GH K F+KL+ TL+    L  PE+
Sbjct: 55 GHDKSFEKLAATLRQGFTLPRPEI 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,027
Number of Sequences: 59808
Number of extensions: 135149
Number of successful extensions: 303
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 9
length of query: 109
length of database: 16,821,457
effective HSP length: 72
effective length of query: 37
effective length of database: 12,515,281
effective search space: 463065397
effective search space used: 463065397
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)