GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001279-TA|BGIBMGA001279-PA|IPR001441|Di-trans-poly-cis-
decaprenylcistransferase
         (109 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|...   107   3e-25
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   1.5  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    25   2.7  
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   2.7  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   3.5  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    24   6.2  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    24   6.2  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    23   8.1  

>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score =  107 bits (258), Expect = 3e-25
 Identities = 48/88 (54%), Positives = 62/88 (70%)

Query: 18  IKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVY 77
           I  IK G+VPQHIAF+MDGNRR+A++  ++   GH  GF+ L   LK CL LG+ EV+ +
Sbjct: 26  INTIKRGKVPQHIAFVMDGNRRWARQRRMETIEGHSSGFEALKSLLKVCLKLGVKEVSAF 85

Query: 78  AFSIENFKRSKEEVDALMELAREKFQNL 105
            FSIENFKRSK EVD LME+A+     +
Sbjct: 86  TFSIENFKRSKYEVDMLMEIAKNSLTQI 113


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 40  YAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALM 95
           Y  ++   + T  +K   KL +TLK  +     +   +  S+ENFK + E  ++L+
Sbjct: 644 YGSQSPTSEVTDRYK---KLDDTLK-SISFRFDQAKQFNTSLENFKNALERAESLL 695


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 67  LDLGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLDE 108
           L LG P  T   F  ++F+R  E +D ++ L ++  +  L E
Sbjct: 392 LRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKE 433


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 38  RRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEE 90
           R Y    +  K+    K   K  ETLK  L+  +PEV + +  +  +++   E
Sbjct: 49  RHYQNVGNAYKAEALLKDAKKQCETLKSALNGKLPEVNIESHMLSKYRKYLNE 101


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 12/99 (12%)

Query: 14  QLFCIKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPE 73
           QL    + K G+V Q  +FI   N  +A +N+ D S G       L++ LK  L+L +P+
Sbjct: 32  QLSLQDISKFGKVVQLRSFIPFKNAAHALENANDISEG------VLNDFLKNFLELNLPK 85

Query: 74  VT-----VYAFSIENFKRS-KEEVDALMELAREKFQNLL 106
            +           +N   S K E+DA+     E  Q+LL
Sbjct: 86  ASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDLL 124


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 53  HKGFDKLSETLKWCLDLGIPEV 74
           H+   KL  TL+W +D G+  +
Sbjct: 95  HEASQKLINTLQWRVDTGVERI 116


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 67  LDLGIPEVTVYAFSIENFK--RSKEEVDALMELA 98
           +D+    V + +F  + F    SK++VDALME+A
Sbjct: 310 VDIWSAGVILLSFLTKRFPMFNSKDDVDALMEIA 343


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 60  SETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALM 95
           S  + WC+  G+P +     S+E  + +  +V  L+
Sbjct: 221 SNGIFWCIFFGMPAIGTLKISLERLQLTFMQVSQLV 256


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,592
Number of Sequences: 5004
Number of extensions: 19934
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 8
length of query: 109
length of database: 2,362,478
effective HSP length: 64
effective length of query: 45
effective length of database: 2,042,222
effective search space: 91899990
effective search space used: 91899990
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)