Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001279-TA|BGIBMGA001279-PA|IPR001441|Di-trans-poly-cis-
decaprenylcistransferase
(109 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1213 + 24921603-24921746,24921923-24922786 106 3e-24
06_01_0477 + 3404648-3404657,3405385-3405461,3405638-3406501 106 3e-24
01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908 66 4e-12
12_01_1094 + 11419208-11419419,11420188-11420222,11420398-114204... 27 3.2
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 27 3.2
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 27 4.3
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526... 27 4.3
01_06_1410 + 37116414-37116695,37116796-37116902,37117148-371176... 26 7.4
>07_03_1213 + 24921603-24921746,24921923-24922786
Length = 335
Score = 106 bits (255), Expect = 3e-24
Identities = 48/97 (49%), Positives = 66/97 (68%)
Query: 11 SFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLG 70
+F + + V+ G +P+HIAFIMDGNRRYAK S+ + +GH GF L +L +C ++G
Sbjct: 69 NFIRKCIVAVLSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMG 128
Query: 71 IPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLD 107
+ +TVYAFSI+NFKR EV +LMEL EK LL+
Sbjct: 129 VKYITVYAFSIDNFKRDLTEVKSLMELMEEKINELLE 165
>06_01_0477 + 3404648-3404657,3405385-3405461,3405638-3406501
Length = 316
Score = 106 bits (255), Expect = 3e-24
Identities = 48/97 (49%), Positives = 66/97 (68%)
Query: 11 SFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLG 70
+F + + V+ G +P+HIAFIMDGNRRYAK S+ + +GH GF L +L +C ++G
Sbjct: 50 NFIRKCIVAVLSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRVGFSALIASLLYCYEMG 109
Query: 71 IPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLD 107
+ +TVYAFSI+NFKR EV +LMEL EK LL+
Sbjct: 110 VKYITVYAFSIDNFKRDPTEVKSLMELMEEKINELLE 146
>01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908
Length = 295
Score = 66.5 bits (155), Expect = 4e-12
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 21 IKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFS 80
++ +P+H+A +MDGN R+A+ + + GH G L ET++ GI +T +AFS
Sbjct: 55 LRAESLPRHVAVVMDGNARWARARGLPSAAGHEAGRRALEETVRLSRAWGIRALTAFAFS 114
Query: 81 IENFKRSKEEVDALMEL 97
EN+ R K EVD LM L
Sbjct: 115 NENWSRPKVEVDFLMRL 131
>12_01_1094 +
11419208-11419419,11420188-11420222,11420398-11420438,
11421849-11421938,11422556-11422630,11427609-11427965
Length = 269
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 37 NRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKR 86
+RR KNS+ + G F S T C+ I + T+ A+ +FK+
Sbjct: 47 SRRLGLKNSIQTNFGDDYVFQIASWTYALCILFHISDGTIRAWDTRSFKQ 96
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 80 SIENFKRSKEEVDALMELAREKFQNLL 106
++EN ++KE++D M +REK L+
Sbjct: 921 TVENTPQTKEKIDIYMSYSREKLNKLV 947
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 52 HHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALMELAREKFQNLLD 107
HH D+ ++LK L + PEV V E+ R + + A++ L +NL+D
Sbjct: 827 HHTDDDEYIQSLKEALKVKSPEVLVRTLRAESVDR--QMLAAVLSLIVTMTRNLMD 880
>03_05_0834 -
28051067-28051381,28051675-28052120,28052330-28052671,
28053170-28053310,28053419-28053489,28053575-28053640,
28053874-28054017,28054149-28054207,28054246-28054369,
28054730-28054862,28055138-28055187,28055715-28055824,
28057355-28057436,28057536-28057705,28057812-28058498,
28058645-28058794,28058908-28059039,28059444-28059594,
28060253-28060344,28062478-28062585
Length = 1190
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 42 KKNSVDKSTGHHKGFDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEVDALMELAREK 101
++ S KS G + + K+ LK C LG+ + ++ S KR+ +V + L +K
Sbjct: 95 ERTSSGKSNGKYMPYPKVDSFLKICQILGLAGIDLFTPSDVVEKRNVRKVCMCIRLLSKK 154
Query: 102 FQNL 105
+ +
Sbjct: 155 ARTM 158
>01_06_1410 +
37116414-37116695,37116796-37116902,37117148-37117649,
37118211-37118326,37119007-37119211
Length = 403
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 10 VSFFQLFCIKVIKTGRVPQHIAFIMDGNRRYAKKNSVDKSTGHHKGFDKLSETLKWCLDL 69
+S+ Q F + + GRVP H G + + + G D E+L+WCL+
Sbjct: 100 ISYLQKFFLMYVG-GRVPLHFQEDFCGTALLSAEWLRTDARRTAVGLDLDLESLEWCLEN 158
Query: 70 GIPEVTVYAFS 80
+ ++ +S
Sbjct: 159 NLSKIGADGYS 169
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.137 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,765
Number of Sequences: 37544
Number of extensions: 113486
Number of successful extensions: 273
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 8
length of query: 109
length of database: 14,793,348
effective HSP length: 72
effective length of query: 37
effective length of database: 12,090,180
effective search space: 447336660
effective search space used: 447336660
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)
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