GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001279-TA|BGIBMGA001279-PA|IPR001441|Di-trans-poly-cis-
decaprenylcistransferase
         (109 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   1.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   1.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   3.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   7.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 3   LWIKENCVSFFQLF--CIKVIKTGR 25
           +W+  +C SFFQ F  C   ++ GR
Sbjct: 413 MWMWLSCSSFFQQFFHCYCPVRFGR 437


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 74  VTVYAFSIENFKRSKEEVDALMELAREKFQ 103
           + +Y  S+  F+R   E+D ++E  R K++
Sbjct: 23  IFLYFNSLVRFRRFTIELDKVLESPRGKYE 52


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 56  FDKLSETLKWCLDLGIPEVTVYAFSIENFKRSKEEV 91
           F  L   L +C+ L     TVY  S+    ++  ++
Sbjct: 144 FATLPLRLSFCVVLACSTATVYVMSVVGLSKAPAQI 179


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 3   LWIKENCVSFFQLFCIKVIKTGRVPQ 28
           +WI  + +SF  +   + ++T  VP+
Sbjct: 170 VWICSSAISFPAIVWWRAVRTEEVPE 195


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 25  RVPQHIAFIMDGNRRYAKKNSVDKSTGHHK 54
           R+P+ +  +M  ++R +K  + D+S   H+
Sbjct: 783 RIPEVMRRLMSEDKRLSKSVNGDQSQPPHQ 812


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,492
Number of Sequences: 429
Number of extensions: 1290
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 109
length of database: 140,377
effective HSP length: 50
effective length of query: 59
effective length of database: 118,927
effective search space:  7016693
effective search space used:  7016693
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)