Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001278-TA|BGIBMGA001278-PA|IPR001365|Adenosine/AMP
deaminase
         (303 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   6.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   6.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.4  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 173 NFKPERIGHGVCIHPKY 189
           +FKP+ I   +C H  Y
Sbjct: 42  SFKPQNINANLCTHVHY 58


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 65 FQEDGCCYIELRSTPRDTQYITK 87
          F  DGC     RS  R+ QY+ K
Sbjct: 53 FACDGCAGFFKRSIRRNRQYVCK 75


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 65 FQEDGCCYIELRSTPRDTQYITK 87
          F  DGC     RS  R+ QY+ K
Sbjct: 53 FACDGCAGFFKRSIRRNRQYVCK 75


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,545
Number of Sequences: 317
Number of extensions: 2573
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 303
length of database: 114,650
effective HSP length: 57
effective length of query: 246
effective length of database: 96,581
effective search space: 23758926
effective search space used: 23758926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)