Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001278-TA|BGIBMGA001278-PA|IPR001365|Adenosine/AMP
deaminase
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1571 + 27811510-27811613,27812493-27812563,27812798-278128... 155 3e-38
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 30 2.0
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 29 4.6
02_02_0370 + 9509212-9509293,9509905-9511721 29 4.6
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693... 28 8.1
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 28 8.1
>07_03_1571 +
27811510-27811613,27812493-27812563,27812798-27812889,
27812963-27813022,27813130-27813351,27813450-27813526,
27813618-27813687,27813793-27813906,27813985-27814051,
27814259-27814363,27814470-27814594
Length = 368
Score = 155 bits (377), Expect = 3e-38
Identities = 78/178 (43%), Positives = 115/178 (64%), Gaps = 12/178 (6%)
Query: 124 VVGIELSGNPAVGNFGDFIPALNRARQSGLKVTLHCGEVCNPEEVLEMLNFKPERIGHGV 183
V+GI+LSGNP VG + ++PAL A++ G+ +T+HCGEV N E+ +L+F P+R+GH
Sbjct: 195 VIGIDLSGNPVVGEWETYLPALEHAKELGIPITIHCGEVANRNEIRAVLDFCPQRLGHVC 254
Query: 184 CIHPKYGGTEETWIALCQSKIPVEVCLTSNVNTKITPDYESHHFKELIEAGLSVVLCTDD 243
C++ +E W L IPVE+CLTSNV T P E HHF +L A + LCTDD
Sbjct: 255 CLN------DEEWKKLKSLMIPVEICLTSNVMTGGAPSLELHHFADLYNAKHPLSLCTDD 308
Query: 244 KGVFATSLSQEYRLCAESFALTRIQVAKLSLDAAQCIFS----EANIRELI--IGKIL 295
G+F+TSLS EY L A +F L++ ++ +L+ DA + +F+ + ++REL +GK L
Sbjct: 309 SGLFSTSLSNEYYLVASTFGLSKAELFQLAQDAVEFVFAGDELKRSLRELFERVGKEL 366
Score = 55.6 bits (128), Expect = 5e-08
Identities = 22/77 (28%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 32 RNLSECFQVFSIAHSLTSTSEALVMATELTLQEFQEDGCCYIELRSTPRDTQY--ITKKQ 89
R+L ECF++F + H LT+ + + T+ +++F + Y+E+R+TP++ + +TK+
Sbjct: 61 RSLPECFRLFELYHILTTDHDTVTRITKEVVEDFAMENVVYLEIRTTPKNNEAKGMTKRS 120
Query: 90 YIDSIIRAMEASQLQEV 106
Y++++I+ ++ + EV
Sbjct: 121 YMNAVIKGLKTVEAVEV 137
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 30.3 bits (65), Expect = 2.0
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 78 TPRDTQYITKKQYIDSIIRAMEASQLQEVEEIADIAIERHKIHPDTVVGIELSGNPAVGN 137
TP D Q + K+ SI ++ S L+++E + ++A + H + D L+ AV
Sbjct: 70 TPTDGQTLASKE--QSIPWSLVVSVLKDIEAVVEVAAQ-HFVGDDRKWSF-LAVTEAV-K 124
Query: 138 FGDFIPALNRARQSGLKVTLHCGEVCNPEEV 168
G + A +SG K+ L GEV N EE+
Sbjct: 125 AGVRLAAFG---ESGYKMLLQGGEVANEEEI 152
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 29.1 bits (62), Expect = 4.6
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 145 LNRARQSG----LKVTLHCGEVCNPEEVLEMLNFKPERIGHGVCIHPKYGGTEETWIALC 200
LN+ R+S +K+ HCGE + + + I HGV + K + L
Sbjct: 618 LNKLRESKGMTTIKLRPHCGEAGDIDHLAAAF-LTSHNIAHGVNL--KKSPVLQYLYYLA 674
Query: 201 QSKIPVEVCLTSNVNTKITPDYESHHFKELIEAGLSVVLCTDDK-GVFATS--LSQEYRL 257
Q + + ++ N + DY + F GL+V L TDD + T L +EY +
Sbjct: 675 Q----IGLAMSPLSNNSLFIDYHRNPFPTFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSI 730
Query: 258 CAESFALTRIQVAKLS 273
A + L+ + +++
Sbjct: 731 AASLWKLSSCDLCEIA 746
>02_02_0370 + 9509212-9509293,9509905-9511721
Length = 632
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 86 TKKQYIDSIIRAMEASQLQEVEEIADIAIERHKIHPDTVV-GIELSGNPAVGNFGDFIPA 144
T + Y II + Q ++V E+ + HPDTV +S +G I
Sbjct: 193 TAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRL 252
Query: 145 LNRARQSGLKVT 156
LN +++G++ T
Sbjct: 253 LNEMKENGMQPT 264
>08_02_0981 +
23266174-23266689,23268389-23268549,23269068-23269309,
23270180-23270284,23270746-23270902,23271860-23272028,
23272598-23272638,23273151-23273216,23273524-23273779
Length = 570
Score = 28.3 bits (60), Expect = 8.1
Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 18/179 (10%)
Query: 69 GCCY-IELRSTPRDTQYITKKQYIDSIIRAMEASQLQEVEEIADIAIERHKIHPDTVVGI 127
GC + TP T I ++SI+R+ME+SQ IA +KI V+
Sbjct: 180 GCEFGFSATKTPDATFGIAPDPTVESILRSMESSQYYSENNIAVARGRGYKI----VMTT 235
Query: 128 ELSGNPAVGNFG----DFIPALNRARQSGLKVTL--HCGEVCNPEEVLEMLNFKPERI-G 180
LS + VG F D + + + L +CG + LEML +I
Sbjct: 236 SLSSDVPVGYFSWAEYDIMAPVPPKTEEALAAAFISNCGARNFRLQALEMLESLDVKIDS 295
Query: 181 HGVCIHPKYGGTEETWIALCQSKIPVEVCLTSNVNTKITPDYESHHFKELIEAGLSVVL 239
+G C H + G + L + K + SN +T + F+ L+ + VV+
Sbjct: 296 YGSC-HRNHDGKVDKVETLKRYKFSL-AFENSNEEDYVTEKF----FQSLVTGAIPVVI 348
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 119 IHPDTVVGIELSGNPAVGNFGDFIPALNRARQSGLKVT--LHCGEVCNPEEVLEMLNFKP 176
+H TVV E S +P+V + G ++P+L A +SG H E + ++ N
Sbjct: 227 VHSFTVVD-EASASPSVRSIGGYMPSLLFAPRSGSSAVNETHEAETQDSLDLTHSDNDNT 285
Query: 177 ERIGHGVCIHPKYGGTEET 195
+ + H + + P+ +T
Sbjct: 286 QHVQHHLQLSPEPSAMTDT 304
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,315,367
Number of Sequences: 37544
Number of extensions: 328664
Number of successful extensions: 702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 7
length of query: 303
length of database: 14,793,348
effective HSP length: 82
effective length of query: 221
effective length of database: 11,714,740
effective search space: 2588957540
effective search space used: 2588957540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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