GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001278-TA|BGIBMGA001278-PA|IPR001365|Adenosine/AMP
deaminase
         (303 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   1.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 132 NPAVGNFGDFIPALNRARQSGLKVTL 157
           +P  G   DF   + RA+  GLKV L
Sbjct: 93  DPVYGTLADFDRLVRRAKSLGLKVIL 118


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 184 CIHPKYGGTEETWIALCQSKIPVEVCLTSNVNTKIT 219
           C++P    +   W+ + +    ++VC  ++VN  IT
Sbjct: 110 CVNPYDRDSLSCWLQMTKHHNFIKVCSVNDVNMTIT 145


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,957
Number of Sequences: 429
Number of extensions: 3025
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 303
length of database: 140,377
effective HSP length: 57
effective length of query: 246
effective length of database: 115,924
effective search space: 28517304
effective search space used: 28517304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)