GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001278-TA|BGIBMGA001278-PA|IPR001365|Adenosine/AMP
deaminase
         (303 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04880.1 68417.m00710 adenosine/AMP deaminase family protein ...   159   2e-39
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    31   1.3  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    30   1.7  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    29   2.9  
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)              29   5.1  
At4g09010.1 68417.m01488 L-ascorbate peroxidase, chloroplast, pu...    29   5.1  
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...    28   6.7  
At3g15390.1 68416.m01951 expressed protein low similarity to PRL...    28   6.7  
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)              28   6.7  
At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein ...    28   6.7  

>At4g04880.1 68417.m00710 adenosine/AMP deaminase family protein low
           similarity to SP|P03958 Adenosine deaminase (EC 3.5.4.4)
           (Adenosine aminohydrolase) {Mus musculus}; contains Pfam
           profile PF00962: Adenosine/AMP deaminase
          Length = 355

 Score =  159 bits (387), Expect = 2e-39
 Identities = 83/202 (41%), Positives = 116/202 (57%), Gaps = 9/202 (4%)

Query: 87  KKQYIDSIIRAMEASQLQEVEEIADIAIERHKIHPDTVVGIELSGNPAVGNFGDFIPALN 146
           KK Y+  ++        +   E   +A+E   +    VVGI+LSGNP VG +  F+PAL 
Sbjct: 149 KKIYVRLLLSIDRRETTESAMETVKLALEMRDVG---VVGIDLSGNPLVGEWSTFLPALQ 205

Query: 147 RARQSGLKVTLHCGEVCNPEEVLEMLNFKPERIGHGVCIHPKYGGTEETWIALCQSKIPV 206
            A+ + L +TLHCGEV NP+E+  ML+FKP RIGH  C        +E W  L   +IPV
Sbjct: 206 YAKDNDLHITLHCGEVPNPKEIQAMLDFKPHRIGHA-CFFK-----DEDWTKLKSFRIPV 259

Query: 207 EVCLTSNVNTKITPDYESHHFKELIEAGLSVVLCTDDKGVFATSLSQEYRLCAESFALTR 266
           E+CLTSN+ TK     + HHF +L  A   ++LCTDD GVF+TSLS EY L   S  L++
Sbjct: 260 EICLTSNIVTKSISSIDIHHFADLYNAKHPLILCTDDFGVFSTSLSNEYALAVRSLGLSK 319

Query: 267 IQVAKLSLDAAQCIFSEANIRE 288
            +   L+  A    F+E  +++
Sbjct: 320 SETFALARAAIDATFAEDEVKQ 341



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 8/122 (6%)

Query: 1   MLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRNLSECFQVFSIAHSLTSTSEALVMATEL 60
           +L+L R   + G+      F D   +   + R+L E F++F + H LT+  + +   T  
Sbjct: 25  LLELARVLGEKGVI----VFADVEHVIQKNDRSLVEVFKLFDLIHKLTTDHKTVTRITRE 80

Query: 61  TLQEFQEDGCCYIELRSTPR--DTQYITKKQYIDSIIRAMEASQLQEVEEIADIAIERHK 118
            +++F  +   Y+ELR+TP+  D+  ++K+ Y++++I+ + +  + EV+     A +  K
Sbjct: 81  VVEDFALENVVYLELRTTPKRSDSIGMSKRSYMEAVIQGLRS--VSEVDIDFVTASDSQK 138

Query: 119 IH 120
           +H
Sbjct: 139 LH 140


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 103  LQEVEEIADIAIERHKIHPDTVVGIELSGNPAVGNFGD 140
            LQ+ +++ ++  E  +IH D   G ++SGN AVG  G+
Sbjct: 2804 LQQFQQLVEVQ-ESARIHVDIANGNKVSGNTAVGGLGN 2840


>At1g79280.1 68414.m09242 expressed protein weak similarity to
            Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 74   ELRSTPRDTQYITKKQYIDSIIRAMEASQLQEVE---EIADIAIERHK---IHPDTVVGI 127
            ++ ++ R  Q + +K+  DS++   +   L + E   EIA  A ++ K    HPDT  G 
Sbjct: 1760 QVTTSVRPVQTLVRKRQADSLVSEPQQDSLTQGETSSEIAPPASKKAKGSESHPDTSEGE 1819

Query: 128  ELSGNPAVGNFGD 140
             L+  PA+    D
Sbjct: 1820 NLAKEPAIDELMD 1832


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 5/153 (3%)

Query: 10  DAGISDKTNTFLDEFQIGAGDTRNLSECF-QVFSIAHSLTSTSEALVMATELTLQEFQED 68
           DA I D     L+E  + + + + + E F ++  + HSL      L      ++   +  
Sbjct: 574 DASIFDVLTLLLEE--LSSTNAQIIKEKFLKMIGVKHSLFEFLRILSTKCSPSIFSSEHV 631

Query: 69  GCCYIEL-RSTPRDTQYITKKQYIDSIIRAMEASQLQEVEEIADIAIERHKIHPDTVVGI 127
            C   +L  ST  +TQ       +  +I  M  S L+  E+     +E +    D ++ +
Sbjct: 632 QCLLNQLCGSTSANTQLKAPSIKLLLVILNMFPSYLRGSEKQFLKLLEENDSAADELIVV 691

Query: 128 ELSGNPAVG-NFGDFIPALNRARQSGLKVTLHC 159
                P +  NFGD+ P L +    G +    C
Sbjct: 692 LSKAAPYISVNFGDYYPVLEKVCLEGTRSQTKC 724


>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 59  ELTLQEFQEDGCCYIELRSTPRDTQYITKKQYIDSIIRAMEASQLQEVEEIADIAIERHK 118
           E+  +E  EDG   +E+R TP  T+ I +     +++      + + + E+  +  +R K
Sbjct: 23  EVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL----GEKGRRIRELTSLVQKRFK 78

Query: 119 IHPDTV 124
              D+V
Sbjct: 79  FPQDSV 84


>At4g09010.1 68417.m01488 L-ascorbate peroxidase, chloroplast,
           putative identical to SP|P82281|TL29_ARATH (EC
           1.11.1.11) {Arabidopsis thaliana}; ascorbate peroxidase
           - Spinacia oleracea, (gi:1669585); contains Pfam domain
           PF00141: Peroxidase; contains TIGRfam domain TIGR01409: 
           Tat (twin-arginine translocation) pathway signal
           sequence; identical to ascorbate peroxidase APX4
           (AT4g09010) mRNA, partial cds GI:31980499
          Length = 349

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 123 TVVGIELSGNPAVGNFGDFIPA-LNRAR-----QSGLKVTLHCGEVCNPEEVLEML 172
           T VG+EL GN  + N GD   A LN+ R     QS +K+ L       PE V  +L
Sbjct: 62  TAVGMELIGNGFINNVGDAKAADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLL 117


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 59  ELTLQEFQEDGCCYIELRSTPRDTQYITKKQYIDSIIRAMEASQLQEVEEIADIAIERHK 118
           E+  +E  EDG   +E+R TP  T+ I +     +++      + + + E+  +  +R K
Sbjct: 23  EVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL----GEKGRRIRELTSLVQKRFK 78

Query: 119 IHPDTV 124
              D+V
Sbjct: 79  FPVDSV 84


>At3g15390.1 68416.m01951 expressed protein low similarity to
           PRLI-interacting factor N [Arabidopsis thaliana]
           GI:11139276
          Length = 468

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   YVDAGISDKTNTFLDEFQIGAGDTRNLSECFQVFSIAHSLTSTSEALVMATELT 61
           Y D GIS++  +F  +FQ G+ + RN     +   +  +L S +E  V   ++T
Sbjct: 208 YADVGISNEVVSFYYDFQFGSQEGRNAKNGLEK-EVLEALFSGAERYVDKPKVT 260


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 59  ELTLQEFQEDGCCYIELRSTPRDTQYITKKQYIDSIIRAMEASQLQEVEEIADIAIERHK 118
           E+  +E  EDG   +E+R TP  T+ I +     +++      + + + E+  +  +R K
Sbjct: 23  EVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL----GEKGRRIRELTSLVQKRFK 78

Query: 119 IHPDTV 124
              D+V
Sbjct: 79  FPVDSV 84


>At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 395

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 155 VTLHCGEVCNPEEVLEMLNFKPERIGHGVCIHPKYGGTEE 194
           V L+C E+C+P   LE +    +  GH   +H   GG EE
Sbjct: 223 VCLYCNELCHPFSSLEAVRKHMDAKGH-CKVHYGDGGDEE 261


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,879,252
Number of Sequences: 28952
Number of extensions: 277510
Number of successful extensions: 645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 11
length of query: 303
length of database: 12,070,560
effective HSP length: 81
effective length of query: 222
effective length of database: 9,725,448
effective search space: 2159049456
effective search space used: 2159049456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)